Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 5.7e-59 231.9 263 100.0
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 4.1e-57 225.7 263 98.9
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 1.3e-55 220.7 263 97.0
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 1.3e-55 220.7 263 97.0
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 8.6e-55 218.0 263 96.2
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 8.6e-55 218.0 263 96.2
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 4.3e-54 215.7 263 95.8
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 5.6e-54 215.3 263 95.8
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 2.8e-53 213.0 263 94.3
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 6.2e-53 211.8 263 94.7
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 1.8e-52 210.3 264 94.7
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 1.8e-52 210.3 264 94.7
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 1.8e-52 210.3 264 94.7
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 3.1e-52 209.5 263 95.4
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 4.0e-52 209.1 264 94.3
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 1.3e-50 204.1 263 92.8
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 2.9e-50 203.0 263 92.4
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 3.7e-50 202.6 263 92.4
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 1.1e-49 201.1 263 92.0
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.1e-46 191.0 286 65.0
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 4.3e-46 189.1 263 89.7
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.6e-40 170.6 261 87.0
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.3e-39 167.5 261 86.6
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 86.6
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 2.5e-38 163.3 261 85.4
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 3.3e-38 162.9 261 81.2
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 5.6e-38 162.2 261 85.4
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 5.6e-38 162.2 261 78.2
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 86.2
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 86.2
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 7.3e-38 161.8 261 85.1
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 9.5e-38 161.4 263 85.2
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 1.2e-37 161.0 261 85.1
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 1.6e-37 160.6 263 85.2
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 1.6e-37 160.6 258 86.0
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.6e-37 160.6 261 77.8
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 2.1e-37 160.2 261 83.9
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 2.1e-37 160.2 261 85.8
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 2.8e-37 159.8 261 79.3
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 2.8e-37 159.8 260 85.4
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 4.7e-37 159.1 261 80.8
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 4.7e-37 159.1 261 85.1
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 6.2e-37 158.7 258 85.3
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 6.2e-37 158.7 261 82.4
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 85.1
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 83.5
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 77.8
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 85.4
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 8.1e-37 158.3 261 85.8
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.4e-36 157.5 261 85.1
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.4e-36 157.5 260 85.0
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 1.4e-36 157.5 258 85.7
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 83.9
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 84.7
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 84.7
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 84.7
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 2.4e-36 156.8 261 85.4
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 84.7
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 4.0e-36 156.0 258 84.5
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 4.0e-36 156.0 261 85.8
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 4.0e-36 156.0 261 85.8
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 6.8e-36 155.2 261 78.9
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 83.5
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 84.7
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 84.7
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 84.7
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 3.4e-35 152.9 261 76.6
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 83.1
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.3e-34 151.0 261 83.1
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 2.2e-34 150.2 261 82.0
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 3.8e-34 149.4 261 84.3
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.4e-34 148.3 261 83.1
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 2.4e-33 146.7 261 83.9
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 3.2e-33 146.4 261 82.4
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 4.1e-33 146.0 256 82.0
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 7.1e-33 145.2 261 78.9
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.1e-32 143.7 261 37.2
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.7e-32 143.3 257 82.5
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 2.7e-32 143.3 261 82.0
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 7.8e-32 141.7 257 82.1
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 1.7e-31 140.6 261 82.8
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 3.0e-31 139.8 261 81.6
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.1e-31 139.0 261 81.2
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 4.7e-29 132.5 261 81.2
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.1e-28 131.3 261 74.7
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 1.4e-28 131.0 261 81.2
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.8e-28 130.6 261 81.2
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 5.8e-27 125.6 261 78.5
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 7.6e-27 125.2 251 82.9
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 1.3e-26 124.4 268 59.3
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.7e-26 124.0 249 82.3
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 6.4e-26 122.1 264 76.5
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 3.2e-25 119.8 235 84.7
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.2e-25 119.4 261 55.6
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.1e-24 117.1 268 78.0
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.0e-24 115.5 299 48.8
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 5.1e-23 112.5 229 85.2
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 8.7e-23 111.7 261 73.9
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.1e-22 111.3 234 83.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.1e-21 107.1 77 67.5
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 2.8e-21 106.7 336 41.7
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 4.8e-21 105.9 77 66.2
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 6.2e-21 105.5 60 83.3
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 8.1e-21 105.1 283 71.7
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 1.1e-20 104.8 76 65.8
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 2.4e-20 103.6 60 80.0
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 9.0e-20 101.7 60 81.7
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.2e-19 101.3 60 80.0
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.5e-19 100.9 87 60.9
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.6e-19 100.1 74 63.5
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.8e-19 99.0 60 76.7
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 9.9e-19 98.2 98 53.1
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.3e-18 97.8 262 68.7
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.2e-18 97.1 60 76.7
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 4.9e-18 95.9 269 70.3
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 6.4e-18 95.5 60 73.3
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.2e-16 91.3 60 71.7
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 1.0e-15 88.2 76 55.3
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.0e-15 88.2 64 65.6
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 8.7e-15 85.1 207 87.4
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 8.7e-15 85.1 134 38.1
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 2.5e-14 83.6 77 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 9.6e-14 81.6 60 60.0
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.8e-12 77.4 55 61.8
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 1.5e-11 74.3 60 55.0
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 5.8e-11 72.4 74 52.7
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 2.9e-10 70.1 59 57.6
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 4.2e-09 66.2 154 32.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 2.1e-08 63.9 60 46.7
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 3.5e-08 63.2 61 49.2
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 7.9e-08 62.0 61 44.3
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.0e-07 61.6 60 46.7
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.0e-07 61.6 61 45.9
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 61 41.0
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 3.9e-07 59.7 60 46.7
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 3.9e-07 59.7 61 42.6
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 3.9e-07 59.7 60 46.7
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 5.1e-07 59.3 61 44.3
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 5.1e-07 59.3 61 41.0
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 6.7e-07 58.9 61 42.6
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 6.7e-07 58.9 61 44.3
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 6.7e-07 58.9 61 44.3
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 44.3
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 45.9
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 39.3
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 39.3
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.1e-06 58.2 62 43.5
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 41.0
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 1.1e-06 58.2 66 40.9
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 45.9
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 42.6
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 1.1e-06 58.2 63 38.1
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 1.5e-06 57.8 60 43.3
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 39.3
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 44.3
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 1.9e-06 57.4 31 90.3
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 44.3
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 45.9
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 42.6
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 2.5e-06 57.0 84 35.7
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 42.6
BcaB03g16235 Brassica carinata HOM05D006238 ORTHO05D007458 4.3e-06 56.2 27 96.3
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 42.6
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 49.2
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 49.2
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 49.2
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 39.3
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 44.3
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 44.3
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 5.6e-06 55.8 68 39.7
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 37.7
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 41.7
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 41.7
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 5.6e-06 55.8 60 43.3
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 5.6e-06 55.8 62 46.8
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 41.0
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 37.7
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 39.3
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 41.0
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 41.0
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 9.6e-06 55.1 61 37.7
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 9.6e-06 55.1 61 47.5
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 9.6e-06 55.1 61 37.7


User provided reference genes

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