Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.5e-59 233.8 263 100.0
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.5e-59 233.8 263 100.0
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 7.5e-59 231.5 263 99.6
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 2.0e-56 223.4 263 97.7
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 2.0e-56 223.4 263 97.7
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 3.9e-55 219.2 263 96.2
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 2.5e-54 216.5 263 95.4
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 2.5e-54 216.5 263 95.8
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 4.3e-54 215.7 263 96.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 9.5e-54 214.5 263 95.1
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 1.6e-53 213.8 263 96.6
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 2.8e-53 213.0 264 95.5
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 2.8e-53 213.0 264 95.5
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 2.8e-53 213.0 264 95.5
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 1.1e-52 211.1 264 94.7
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 3.4e-51 206.1 263 93.2
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 7.5e-51 204.9 263 92.8
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 9.8e-51 204.5 263 92.8
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 2.9e-50 203.0 263 92.4
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 4.6e-48 195.7 286 66.1
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 1.7e-47 193.7 263 91.3
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.6e-40 170.6 261 87.4
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 3.5e-40 169.5 261 86.6
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.7e-39 167.2 261 86.2
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 3.9e-39 166.0 263 85.9
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 5.1e-39 165.6 261 87.0
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 5.1e-39 165.6 261 87.0
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 6.6e-39 165.2 261 87.0
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 8.6e-39 164.9 261 86.2
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.1e-38 164.5 258 86.8
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 1.1e-38 164.5 261 78.5
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 85.4
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 85.4
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.9e-38 163.7 261 85.4
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 2.5e-38 163.3 263 85.9
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 2.5e-38 163.3 261 83.5
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 2.5e-38 163.3 261 85.1
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 3.3e-38 162.9 261 86.6
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 3.3e-38 162.9 258 86.4
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 5.6e-38 162.2 261 83.9
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.2e-37 161.0 261 85.1
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 1.2e-37 161.0 261 80.5
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.2e-37 161.0 263 85.6
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.6e-37 160.6 261 79.7
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 2.1e-37 160.2 261 85.1
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 2.1e-37 160.2 261 85.4
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 2.8e-37 159.8 263 84.8
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 2.8e-37 159.8 258 86.0
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 83.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 78.2
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 85.8
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 86.2
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 86.2
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 3.6e-37 159.5 261 77.8
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 4.7e-37 159.1 261 85.8
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 4.7e-37 159.1 258 85.7
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 6.2e-37 158.7 258 84.9
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 6.2e-37 158.7 261 83.5
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 1.4e-36 157.5 261 80.1
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 1.4e-36 157.5 258 85.7
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.8e-36 157.1 261 84.7
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 2.4e-36 156.8 261 84.7
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 85.8
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 3.1e-36 156.4 261 85.8
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 8.9e-36 154.8 261 83.5
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 1.2e-35 154.5 261 78.9
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 1.2e-35 154.5 261 84.3
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 77.0
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 1.3e-34 151.0 261 82.0
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.7e-34 150.6 258 82.9
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 2.9e-34 149.8 261 84.3
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 3.8e-34 149.4 261 83.9
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 6.4e-34 148.7 250 83.2
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 6.4e-34 148.7 261 37.5
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 6.4e-34 148.7 258 82.9
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.4e-33 146.7 261 82.4
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 5.4e-33 145.6 261 78.5
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 9.2e-33 144.8 261 82.0
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.6e-32 142.5 257 81.3
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 1.0e-31 141.4 261 81.6
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.3e-31 141.0 257 80.9
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 1.3e-31 141.0 261 82.4
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.7e-31 140.6 261 81.2
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 1.9e-30 137.1 261 82.0
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 2.5e-30 136.7 261 82.0
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 4.7e-29 132.5 261 75.1
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 3.1e-28 129.8 261 80.1
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.2e-28 129.0 251 84.5
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 2.0e-27 127.1 249 83.1
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 2.6e-27 126.7 265 58.9
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 2.2e-26 123.6 235 86.4
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.2e-26 123.6 264 76.5
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 3.8e-26 122.9 258 77.9
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.1e-25 121.3 261 55.6
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.2e-24 117.9 268 78.0
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 4.6e-24 115.9 299 48.8
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 1.7e-23 114.0 229 86.0
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 3.3e-22 109.8 234 82.9
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 7.3e-22 108.6 261 72.8
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 9.6e-22 108.2 60 86.7
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.8e-21 106.7 74 67.6
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 2.8e-21 106.7 283 71.7
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 3.6e-21 106.3 60 83.3
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 3.6e-21 106.3 74 66.2
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 4.8e-21 105.9 76 67.1
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 6.2e-21 105.5 336 41.4
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 1.8e-20 104.0 60 83.3
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 2.4e-20 103.6 60 83.3
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.0e-19 100.5 84 60.7
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.0e-19 100.5 60 78.3
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.0e-19 100.5 71 63.4
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 2.6e-19 100.1 98 54.1
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 3.4e-19 99.8 60 80.0
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 4.5e-19 99.4 262 68.7
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 2.2e-18 97.1 60 75.0
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 8.4e-18 95.1 269 69.9
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 6.0e-16 89.0 60 68.3
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 1.8e-15 87.4 76 52.6
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 3.9e-15 86.3 64 64.1
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 8.7e-15 85.1 77 49.4
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 8.7e-15 85.1 207 87.9
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 1.1e-14 84.7 134 38.1
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 2.5e-14 83.6 60 61.7
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 3.7e-13 79.7 55 63.6
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 2.6e-11 73.6 262 69.1
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 2.6e-11 73.6 270 59.3
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 7.6e-11 72.0 72 51.4
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 7.1e-09 65.5 154 31.8
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 3.5e-08 63.2 61 47.5
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 4.6e-08 62.8 60 45.0
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 6.0e-08 62.4 60 46.7
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 61 41.0
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 5.1e-07 59.3 61 42.6
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 6.7e-07 58.9 61 42.6
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 6.7e-07 58.9 62 43.5
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 6.7e-07 58.9 66 40.9
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 6.7e-07 58.9 60 45.0
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 8.7e-07 58.5 60 43.3
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 42.6
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 39.3
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 8.7e-07 58.5 69 39.1
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 37.7
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 37.7
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 8.7e-07 58.5 61 41.0
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 1.1e-06 58.2 31 90.3
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 42.6
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 45.9
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.1e-06 58.2 61 44.3
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 1.5e-06 57.8 61 44.3
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 1.5e-06 57.8 60 43.3
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 1.5e-06 57.8 84 35.7
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.9e-06 57.4 61 37.7
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 42.6
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 2.5e-06 57.0 61 44.3
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 2.5e-06 57.0 63 38.1
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 4.3e-06 56.2 60 43.3
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 37.7
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 47.5
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 4.3e-06 56.2 61 47.5
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 57 40.4
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 5.6e-06 55.8 59 44.1
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 5.6e-06 55.8 62 46.8
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 37.7
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 37.7
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 5.6e-06 55.8 61 42.6
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 7.4e-06 55.5 60 40.0
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 47.5
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 7.4e-06 55.5 63 39.7
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 7.4e-06 55.5 61 42.6
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 9.6e-06 55.1 75 37.3
BcaB03g16235 Brassica carinata HOM05D006238 ORTHO05D007458 9.6e-06 55.1 27 92.6


User provided reference genes

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