Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-174 616.7 355 100.0
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.5e-147 526.6 354 87.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 3.8e-146 521.9 354 86.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 8.4e-146 520.8 336 88.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.7e-144 515.8 336 84.2
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.5e-134 483.4 357 75.1
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.5e-131 473.4 358 78.2
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.5e-131 473.4 358 79.1
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 6.4e-130 468.0 349 79.7
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 6.4e-130 468.0 349 79.7
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 4.6e-128 461.8 356 78.4
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-126 457.2 342 74.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.0e-119 434.1 357 68.9
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 8.7e-119 431.0 339 72.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.8e-116 423.3 339 71.7
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.8e-116 423.3 335 71.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.6e-107 392.9 348 65.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 5.0e-98 362.1 350 61.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.0e-90 335.5 244 68.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.9e-89 333.6 254 66.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.2e-89 332.8 256 66.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 5.5e-89 332.0 260 65.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.1e-88 330.1 244 67.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.7e-88 329.7 237 69.6
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.6e-88 329.3 255 65.1
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.7e-88 328.9 246 67.9
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 8.0e-88 328.2 251 64.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.8e-87 327.0 246 68.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.8e-87 327.0 261 64.4
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 3.0e-87 326.2 252 63.9
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.9e-87 325.9 253 66.4
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 3.9e-87 325.9 254 65.4
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.2e-87 325.5 245 66.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 6.7e-87 325.1 247 66.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 6.7e-87 325.1 319 56.7
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.8e-87 324.7 257 65.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.1e-86 324.3 255 63.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.5e-86 323.9 247 65.6
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.5e-86 323.9 245 66.9
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.0e-86 323.6 243 65.8
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.6e-86 323.2 248 66.5
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-86 323.2 236 67.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 3.3e-86 322.8 260 65.0
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 4.4e-86 322.4 262 64.5
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 5.7e-86 322.0 258 65.5
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 9.7e-86 321.2 338 55.3
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.7e-85 320.5 255 65.1
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-85 320.5 252 63.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.2e-85 320.1 254 63.0
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.2e-85 320.1 254 63.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.2e-85 320.1 245 67.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-85 320.1 248 65.7
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.8e-85 319.7 245 64.5
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.7e-85 319.3 255 65.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 4.8e-85 318.9 323 54.8
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 6.3e-85 318.5 243 64.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.2e-85 318.2 255 65.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 8.2e-85 318.2 255 63.5
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 1.4e-84 317.4 321 58.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.4e-84 316.6 280 61.4
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.4e-84 316.6 263 63.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.1e-84 316.2 255 63.1
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.0e-83 313.5 253 63.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.0e-83 313.5 255 62.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.6e-83 313.2 257 62.6
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.6e-83 313.2 252 62.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.5e-83 312.8 238 66.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 4.5e-83 312.4 254 63.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.0e-82 311.2 353 51.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.0e-82 311.2 347 51.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.3e-82 310.8 254 63.0
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.7e-82 310.5 254 61.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.2e-82 310.1 254 61.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 2.9e-82 309.7 247 61.5
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.9e-82 309.7 246 64.6
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.9e-82 309.7 254 62.6
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.9e-82 309.7 238 65.1
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 5.0e-82 308.9 347 54.2
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.5e-82 308.1 249 63.9
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 8.5e-82 308.1 238 63.9
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 8.5e-82 308.1 261 60.5
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.1e-81 307.8 237 65.0
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.5e-81 306.6 236 64.8
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.2e-81 306.2 236 65.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 9.4e-81 304.7 243 61.3
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 9.4e-81 304.7 257 60.3
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.2e-80 304.3 356 51.1
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.1e-80 303.5 252 61.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.0e-79 301.2 328 54.0
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 4.0e-79 299.3 245 62.9
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.2e-79 298.9 252 60.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.3e-77 294.3 244 60.2
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.7e-77 292.7 342 51.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.7e-77 292.7 257 57.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.4e-76 290.0 344 48.0
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 4.1e-76 289.3 259 57.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.5e-73 278.9 313 49.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.7e-69 267.3 200 68.0
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.0e-63 246.5 257 50.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 4.0e-63 246.1 191 64.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.7e-62 242.3 261 51.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 6.3e-61 238.8 254 52.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 4.1e-60 236.1 250 52.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.7e-59 233.4 256 47.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 8.0e-56 221.9 248 49.6
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.9e-53 213.4 238 47.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.2e-51 208.0 118 89.8
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.0e-51 205.7 133 74.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 8.6e-50 201.8 192 53.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.6e-49 199.1 158 64.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.3e-39 167.2 158 55.7
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 5.8e-38 162.5 160 54.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.7e-37 161.0 142 59.2
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-36 157.9 152 54.6
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.5e-35 153.3 180 47.8
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.3e-33 146.7 158 51.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-28 131.7 159 50.3
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 9.3e-28 128.6 102 63.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-27 128.3 179 43.6
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 6.0e-27 125.9 102 61.8
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.6e-25 119.4 99 63.6
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.8e-24 117.1 94 61.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.0e-23 112.1 74 70.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-20 105.1 82 63.4
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.1e-20 105.1 84 57.1
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.0e-18 98.6 89 57.3
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.5e-17 94.7 130 42.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.9e-17 94.4 200 29.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.6e-17 92.8 91 53.8
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.8e-16 89.7 183 35.5
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.1e-15 88.6 50 80.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-15 88.2 64 64.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-15 88.2 67 64.2
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 9.0e-15 85.5 56 73.2
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-12 78.6 162 32.7
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 3.2e-12 77.0 76 47.4
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.2e-11 75.1 55 63.6
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.6e-11 73.2 149 34.2
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.0e-10 72.0 94 47.9
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.7e-10 68.9 92 44.6
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.1e-07 62.0 38 71.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 4.5e-06 56.6 218 26.6


User provided reference genes

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