Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 1.5e-144 516.2 257 100.0
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 4.4e-80 302.0 209 76.6
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 4.4e-80 302.0 209 76.6
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 2.5e-75 286.2 208 74.0
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 2.5e-75 286.2 208 74.0
BcaB01g06323 Brassica carinata HOM05D003303 ORTHO05D000019 6.7e-52 208.4 157 71.3
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 5.6e-43 178.7 182 55.5
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 1.5e-35 154.1 203 47.3
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 7.9e-29 131.7 189 42.9
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 3.9e-28 129.4 253 37.5
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 3.3e-27 126.3 253 37.2
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 3.3e-27 126.3 253 37.2
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 3.3e-27 126.3 253 37.2
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 3.9e-20 102.8 191 37.7
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 4.4e-19 99.4 203 36.9
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 7.4e-19 98.6 203 37.4
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 7.4e-19 98.6 203 37.4
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 3.1e-17 93.2 200 33.0
BcaB01g06300 Brassica carinata HOM05D000056 ORTHO05D000019 2.0e-16 90.5 47 91.5
BcaB01g06325 Brassica carinata HOM05D000056 ORTHO05D000019 2.0e-16 90.5 47 91.5
BcaB01g06324 Brassica carinata HOM05D000056 ORTHO05D000019 7.9e-13 78.6 41 90.2
BcaB08g37074 Brassica carinata HOM05D000056 ORTHO05D000019 1.5e-11 74.3 41 82.9
AT5G11290 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 4.4e-11 72.8 41 82.9
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 4.4e-11 72.8 143 35.7
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.7e-11 72.4 245 29.8
Sp2g22140 Schrenkiella parvula HOM05D000056 ORTHO05D000019 7.4e-11 72.0 41 75.6
AL7G19920 Arabidopsis lyrata HOM05D000056 ORTHO05D000471 1.7e-10 70.9 50 68.0
AL6G21920 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 2.8e-10 70.1 41 80.5
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 6.3e-10 68.9 62 53.2
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 1.1e-09 68.2 170 30.0
BcaC07g37202 Brassica carinata HOM05D000056 ORTHO05D000019 1.4e-09 67.8 50 62.0
C08p06050 Brassica napus HOM05D000056 ORTHO05D000019 1.4e-09 67.8 50 62.0
BolC8t47402H Brassica oleracea HOM05D000056 ORTHO05D000019 1.4e-09 67.8 50 62.0
A08p05510 Brassica napus HOM05D000056 ORTHO05D000019 2.4e-09 67.0 41 70.7
A09p06190 Brassica napus HOM05D000056 ORTHO05D000019 2.4e-09 67.0 53 62.3
BraA08t32556Z Brassica rapa HOM05D000056 ORTHO05D000019 2.4e-09 67.0 41 70.7
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.1e-09 66.2 157 31.2
Carub.0005s1267 Capsella rubella HOM05D003358 ORTHO05D003864 4.1e-09 66.2 106 38.7
C09p06840 Brassica napus HOM05D000056 ORTHO05D000019 5.3e-09 65.9 41 73.2
BraA09t36263Z Brassica rapa HOM05D000056 ORTHO05D000019 5.3e-09 65.9 41 73.2
THA.LOC104815038 Tarenaya hassleriana HOM05D000056 ORTHO05D000019 5.3e-09 65.9 40 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 7.0e-09 65.5 193 31.6
Carub.0007s0858 Capsella rubella HOM05D000056 ORTHO05D000019 7.0e-09 65.5 50 60.0
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 7.0e-09 65.5 159 31.4
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 7.0e-09 65.5 159 30.8
THA.LOC104799707 Tarenaya hassleriana HOM05D000056 ORTHO05D000019 7.0e-09 65.5 40 67.5
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 9.1e-09 65.1 162 31.5
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.2e-08 64.7 159 30.2
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.6e-08 64.3 178 30.3
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.6e-08 64.3 189 30.2
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.0e-08 63.9 159 30.2
AT4G31980 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 2.6e-08 63.5 41 70.7
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 2.6e-08 63.5 195 29.2
Carub.0007s0859 Capsella rubella HOM05D000056 ORTHO05D000019 2.6e-08 63.5 50 58.0
CARHR239870 Cardamine hirsuta HOM05D000056 ORTHO05D000019 2.6e-08 63.5 41 65.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 5.9e-08 62.4 162 29.6
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 5.9e-08 62.4 164 31.1
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 7.7e-08 62.0 140 32.9
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 7.7e-08 62.0 173 31.2
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 7.7e-08 62.0 140 33.6
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 7.7e-08 62.0 194 27.3
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 7.7e-08 62.0 192 29.2
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 7.7e-08 62.0 84 42.9
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.0e-07 61.6 140 32.1
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.0e-07 61.6 162 29.6
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.0e-07 61.6 144 36.1
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.0e-07 61.6 162 29.6
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.0e-07 61.6 162 29.6
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.0e-07 61.6 162 29.6
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.0e-07 61.6 171 32.7
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 1.3e-07 61.2 140 32.1
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.3e-07 61.2 192 30.2
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 1.3e-07 61.2 201 29.4
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.3e-07 61.2 201 29.4
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 1.3e-07 61.2 190 27.9
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.3e-07 61.2 206 26.7
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 1.3e-07 61.2 162 29.0
Aa31LG11G8170 Aethionema arabicum HOM05D000056 ORTHO05D000019 1.7e-07 60.8 61 45.9
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 1.7e-07 60.8 136 32.4
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 1.7e-07 60.8 190 27.9
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 1.7e-07 60.8 134 35.1
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 1.7e-07 60.8 136 30.9
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.7e-07 60.8 201 29.4
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 2.2e-07 60.5 140 32.9
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 2.2e-07 60.5 140 32.9
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 2.2e-07 60.5 159 29.6
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 2.2e-07 60.5 201 28.9
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 2.2e-07 60.5 159 27.7
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 2.2e-07 60.5 159 27.7
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 2.9e-07 60.1 145 31.7
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 2.9e-07 60.1 159 29.6
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 2.9e-07 60.1 136 31.6
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 2.9e-07 60.1 145 31.0
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.9e-07 60.1 136 32.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 2.9e-07 60.1 136 32.4
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 3.8e-07 59.7 140 32.1
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 3.8e-07 59.7 136 32.4
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 5.0e-07 59.3 159 28.9
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 5.0e-07 59.3 159 28.9
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 5.0e-07 59.3 140 30.7
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 5.0e-07 59.3 136 32.4
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 6.5e-07 58.9 136 31.6
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 6.5e-07 58.9 140 31.4
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 6.5e-07 58.9 145 29.7
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 6.5e-07 58.9 193 31.1
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 8.5e-07 58.5 73 45.2
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 8.5e-07 58.5 206 26.7
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 8.5e-07 58.5 206 26.7
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 8.5e-07 58.5 205 27.3
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.1e-06 58.2 136 32.4
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.1e-06 58.2 159 27.7
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.5e-06 57.8 73 45.2
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.5e-06 57.8 140 30.0
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.5e-06 57.8 162 29.0
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.5e-06 57.8 82 41.5
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 1.5e-06 57.8 204 27.5
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 1.5e-06 57.8 192 28.6
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 1.5e-06 57.8 136 31.6
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.9e-06 57.4 206 27.2
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 1.9e-06 57.4 162 27.8
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 1.9e-06 57.4 149 29.5
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.9e-06 57.4 149 29.5
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.9e-06 57.4 149 29.5
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.9e-06 57.4 149 29.5
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.9e-06 57.4 144 34.7
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.9e-06 57.4 146 30.1
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.9e-06 57.4 162 27.2
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.9e-06 57.4 73 43.8
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 2.5e-06 57.0 201 28.4
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 2.5e-06 57.0 201 28.4
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 2.5e-06 57.0 140 30.7
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 2.5e-06 57.0 83 42.2
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 2.5e-06 57.0 135 31.1
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 2.5e-06 57.0 137 30.7
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 2.5e-06 57.0 137 30.7
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 2.5e-06 57.0 145 29.7
Atru.chr5.1348 Acer truncatum HOM05D003358 ORTHO05D003864 3.2e-06 56.6 85 40.0
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 3.2e-06 56.6 73 43.8
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 4.2e-06 56.2 73 46.6
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 4.2e-06 56.2 159 29.6
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 4.2e-06 56.2 82 41.5
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 4.2e-06 56.2 82 41.5
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 4.2e-06 56.2 82 41.5
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 4.2e-06 56.2 82 41.5
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 4.2e-06 56.2 82 41.5
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 4.2e-06 56.2 106 35.8
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 4.2e-06 56.2 136 30.9
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.2e-06 56.2 134 32.8
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 5.5e-06 55.8 73 45.2
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 5.5e-06 55.8 73 45.2
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 5.5e-06 55.8 202 27.2
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 5.5e-06 55.8 73 45.2
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 5.5e-06 55.8 169 29.0
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 7.2e-06 55.5 73 42.5
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 7.2e-06 55.5 145 29.0
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 9.4e-06 55.1 82 40.2
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 9.4e-06 55.1 82 40.2
Lj8C650T1 Lonicera japonica HOM05D000056 ORTHO05D000019 9.4e-06 55.1 40 55.0
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 9.4e-06 55.1 201 27.9
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 9.4e-06 55.1 145 30.3
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 9.4e-06 55.1 145 28.3


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