Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 7.9e-225 783.5 406 100.0
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 1.7e-171 606.3 324 95.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-156 556.2 394 77.4
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 2.3e-155 552.7 394 76.9
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.1e-145 519.6 355 77.2
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.8e-145 519.2 354 77.1
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 8.1e-145 517.7 355 77.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.8e-144 516.5 355 76.6
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 5.2e-144 515.0 355 76.9
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 6.9e-144 514.6 355 76.9
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 6.9e-144 514.6 354 76.8
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.4e-143 511.9 395 70.1
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-142 509.6 355 77.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.1e-141 507.3 353 75.9
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.7e-140 502.7 393 71.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 6.0e-140 501.5 353 75.1
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-139 500.4 353 75.4
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.3e-139 500.4 353 75.4
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-138 497.3 353 75.1
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.9e-134 482.6 355 73.0
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 4.9e-134 481.9 355 72.4
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.6e-132 476.9 355 72.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 7.9e-132 474.6 355 71.3
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 4.8e-129 465.3 359 69.4
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.5e-119 433.7 355 65.1
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 1.1e-106 391.0 355 60.3
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 9.7e-106 387.9 355 60.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 9.7e-106 387.9 355 60.0
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.4e-104 384.0 355 58.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.8e-104 383.6 355 58.9
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.8e-104 383.6 355 59.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.4e-104 383.3 355 59.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 5.3e-104 382.1 355 58.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 5.3e-104 382.1 355 58.9
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 3.4e-103 379.4 355 58.0
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 4.5e-103 379.0 355 58.6
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 4.5e-103 379.0 355 58.0
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 4.5e-103 379.0 355 58.9
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.9e-103 378.6 356 58.7
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.9e-103 378.6 356 58.7
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.9e-102 376.3 355 58.3
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 2.9e-102 376.3 352 57.7
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 5.0e-102 375.6 355 56.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.5e-102 374.8 356 57.9
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.1e-101 374.4 355 56.9
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.4e-101 374.0 356 58.7
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 4.2e-101 372.5 355 56.3
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 4.2e-101 372.5 355 57.5
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 5.5e-101 372.1 355 57.2
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 7.2e-101 371.7 350 58.3
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 7.2e-101 371.7 355 55.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 7.2e-101 371.7 355 55.8
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 9.4e-101 371.3 354 57.6
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 9.4e-101 371.3 355 56.3
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 9.4e-101 371.3 355 57.2
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.6e-100 370.5 351 59.3
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 4.7e-100 369.0 355 56.9
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 4.7e-100 369.0 355 56.1
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.9e-100 368.2 358 55.3
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.4e-99 367.5 410 52.2
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 1.4e-99 367.5 355 58.3
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.8e-99 367.1 351 57.0
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.8e-99 367.1 410 52.2
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.3e-99 366.7 355 56.9
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.0e-99 366.3 353 56.7
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.7e-99 365.2 355 56.6
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 6.7e-99 365.2 360 56.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 8.8e-99 364.8 358 57.8
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.1e-98 364.4 355 57.5
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.1e-98 364.4 353 56.4
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.1e-98 364.4 355 55.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-98 364.4 355 55.8
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.1e-98 364.4 407 52.6
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.3e-98 362.8 354 55.9
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.3e-98 362.8 355 55.5
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.4e-98 362.5 354 55.4
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 4.4e-98 362.5 312 62.5
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 5.7e-98 362.1 355 56.3
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 5.7e-98 362.1 355 56.3
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 7.4e-98 361.7 354 56.5
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 9.7e-98 361.3 355 57.2
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.7e-98 361.3 350 57.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.7e-98 361.3 362 54.7
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.7e-97 360.5 335 59.4
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.2e-97 360.1 357 55.5
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.2e-97 360.1 355 56.3
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.2e-97 360.1 326 59.5
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 2.8e-97 359.8 351 55.6
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 6.3e-97 358.6 338 58.9
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.1e-96 357.8 354 55.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.4e-96 357.5 410 50.5
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.4e-96 356.7 360 55.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.6e-95 353.2 354 54.8
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.9e-95 352.1 312 59.3
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.2e-93 346.3 355 54.6
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.2e-93 345.9 357 54.9
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.2e-93 345.9 357 55.2
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 5.5e-93 345.5 332 57.5
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.2e-93 345.1 359 53.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.6e-92 344.0 355 52.4
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-92 343.6 332 57.5
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.1e-92 343.6 354 53.1
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 3.0e-91 339.7 383 50.9
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 5.2e-91 339.0 349 55.0
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.5e-90 337.4 355 54.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 7.4e-90 335.1 332 55.1
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 6.3e-89 332.0 355 53.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.8e-88 330.5 382 50.3
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.5e-87 326.2 408 47.5
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.3e-86 324.3 340 51.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.6e-84 317.4 356 49.7
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.6e-84 316.2 348 51.1
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.8e-83 313.9 403 46.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 6.7e-83 312.0 343 49.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.2e-82 311.2 349 50.4
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.6e-82 310.1 335 54.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 3.1e-80 303.1 315 54.6
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.2e-78 297.0 355 49.0
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.1e-77 294.7 355 48.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.1e-77 294.7 368 48.6
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-74 284.6 347 49.0
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.4e-74 283.1 322 54.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.4e-74 282.7 191 79.1
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.0e-70 271.6 357 44.8
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.0e-70 271.6 357 44.0
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 8.6e-70 268.5 178 80.9
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-69 268.1 355 45.4
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 3.6e-68 263.1 242 59.5
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 6.1e-68 262.3 378 43.7
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.3e-67 260.4 240 60.8
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.4e-66 256.5 357 41.5
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.4e-64 251.1 289 50.9
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 9.2e-64 248.4 320 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 5.0e-62 242.7 369 40.9
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 4.7e-60 236.1 327 49.5
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 6.1e-60 235.7 311 49.8
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.2e-58 231.5 354 39.3
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 7.0e-56 222.2 212 53.3
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.3e-51 207.2 349 43.3
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 5.8e-50 202.6 101 100.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.8e-50 201.8 185 56.8
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.0e-46 190.3 244 45.9
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.3e-38 164.1 354 33.6
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.0e-38 163.7 334 35.0
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.5e-34 151.4 138 55.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.7e-33 147.9 75 94.7
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.6e-28 131.3 176 47.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 3.1e-19 100.5 223 33.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.0e-18 97.8 150 39.3
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.6e-18 97.4 79 60.8
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.6e-18 97.4 79 60.8
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.1e-15 87.8 77 53.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.9e-14 83.6 49 81.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.9e-14 83.6 49 81.6
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.6e-12 78.2 69 59.4
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-07 62.0 98 39.8


User provided reference genes

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