Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05043 Brassica carinata HOM05D003455 ORTHO05D004165 3.1e-162 575.1 298 100.0
A03p07220 Brassica napus HOM05D003455 ORTHO05D004165 3.5e-145 518.5 289 93.1
Sp6g28490 Schrenkiella parvula HOM05D003455 ORTHO05D004165 7.3e-143 510.8 289 91.0
BraA03t10044Z Brassica rapa HOM05D003455 ORTHO05D004165 9.5e-143 510.4 289 91.7
BolC3t13319H Brassica oleracea HOM05D003455 ORTHO05D004165 2.1e-142 509.2 289 91.3
CARHR197710 Cardamine hirsuta HOM05D003455 ORTHO05D004165 3.6e-142 508.4 289 90.7
C03p08220 Brassica napus HOM05D003455 ORTHO05D004165 3.1e-141 505.4 289 90.3
AL6G26470 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 6.8e-141 504.2 289 90.0
Thhalv10013660m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 1.5e-140 503.1 289 90.3
AT5G15610 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 4.4e-140 501.5 289 88.9
Carub.0006s1377 Capsella rubella HOM05D003455 ORTHO05D004165 2.3e-136 489.2 289 87.5
Aa31LG11G13970 Aethionema arabicum HOM05D003455 ORTHO05D004165 5.6e-135 484.6 289 86.5
CARHR076170 Cardamine hirsuta HOM05D003455 ORTHO05D004165 5.8e-132 474.6 289 85.1
Aa31LG5G12730 Aethionema arabicum HOM05D003455 ORTHO05D004165 2.9e-131 472.2 289 83.4
AT3G02200 Arabidopsis thaliana HOM05D003455 ORTHO05D004165 4.1e-130 468.4 289 83.4
Thhalv10020815m.g Eutrema salsugineum HOM05D003455 ORTHO05D004165 9.2e-130 467.2 289 83.7
Carub.0003s0132 Capsella rubella HOM05D003455 ORTHO05D004165 2.1e-129 466.1 290 83.4
THA.LOC104822323 Tarenaya hassleriana HOM05D003455 ORTHO05D004165 2.1e-129 466.1 289 81.7
A05p45080 Brassica napus HOM05D003455 ORTHO05D004165 2.3e-128 462.6 289 82.4
BraA05t23153Z Brassica rapa HOM05D003455 ORTHO05D004165 2.3e-128 462.6 289 82.4
A03p32840 Brassica napus HOM05D003455 ORTHO05D004165 3.9e-128 461.8 289 84.1
AL3G11450 Arabidopsis lyrata HOM05D003455 ORTHO05D004165 8.6e-128 460.7 289 82.4
BolC3t16262H Brassica oleracea HOM05D003455 ORTHO05D004165 1.1e-127 460.3 289 83.4
BraA03t12453Z Brassica rapa HOM05D003455 ORTHO05D004165 1.5e-127 459.9 289 83.7
BcaC01g04456 Brassica carinata HOM05D003455 ORTHO05D004165 7.3e-127 457.6 289 82.7
BcaC01g04475 Brassica carinata HOM05D003455 ORTHO05D004165 7.3e-127 457.6 289 82.7
BcaC01g04476 Brassica carinata HOM05D003455 ORTHO05D004165 7.3e-127 457.6 289 82.7
BolC5t35100H Brassica oleracea HOM05D003455 ORTHO05D004165 2.1e-126 456.1 300 79.7
Sp3g01270 Schrenkiella parvula HOM05D003455 ORTHO05D004165 2.1e-126 456.1 289 82.0
C09p75580 Brassica napus HOM05D003455 ORTHO05D004165 2.8e-126 455.7 300 79.7
C03p39970 Brassica napus HOM05D003455 ORTHO05D004165 6.2e-126 454.5 289 82.0
BcaC01g04477 Brassica carinata HOM05D003455 ORTHO05D004165 1.4e-125 453.4 289 82.0
BcaC09g47686 Brassica carinata HOM05D003455 ORTHO05D002350 2.4e-114 416.0 289 75.1
BolC1t05918H Brassica oleracea HOM05D003455 ORTHO05D002350 4.2e-114 415.2 289 75.1
BcaC05g30332 Brassica carinata HOM05D003455 ORTHO05D004165 9.3e-114 414.1 289 75.8
BraA01t04626Z Brassica rapa HOM05D003455 ORTHO05D002350 1.2e-113 413.7 292 73.6
Dinv33837 Davidia involucrata HOM05D003455 ORTHO05D004165 3.3e-111 405.6 289 68.9
Atru.chr8.508 Acer truncatum HOM05D003455 ORTHO05D004165 4.3e-111 405.2 289 69.9
Thecc.04G097900 Theobroma cacao HOM05D003455 ORTHO05D004165 2.1e-110 402.9 289 69.2
Duzib264G0955 Durio zibethinus HOM05D003455 ORTHO05D004165 6.2e-110 401.4 289 68.9
TWI32G0721 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 6.2e-110 401.4 289 68.5
Gohir.D04G034300 Gossypium hirsutum HOM05D003455 ORTHO05D004165 1.4e-109 400.2 289 69.2
Gorai.012G038600 Gossypium raimondii HOM05D003455 ORTHO05D004165 1.8e-109 399.8 289 69.6
Ciclev10011854m.g Citrus clementina HOM05D003455 ORTHO05D004165 3.1e-109 399.1 289 68.2
Duzib147G0154 Durio zibethinus HOM05D003455 ORTHO05D004165 3.1e-109 399.1 289 68.5
Gohir.A05G381100 Gossypium hirsutum HOM05D003455 ORTHO05D004165 3.1e-109 399.1 289 69.2
COL.COLO4_02772 Corchorus olitorius HOM05D003455 ORTHO05D004165 4.0e-109 398.7 289 69.6
Prupe.3G252000 Prunus persica HOM05D003455 ORTHO05D004165 6.9e-109 397.9 289 67.1
Nn3g17485 Nelumbo nucifera HOM05D003455 ORTHO05D004165 2.0e-108 396.4 289 69.2
TWI34G1947 Tripterygium wilfordii HOM05D003455 ORTHO05D004165 3.4e-108 395.6 289 68.9
Lj4A121T77 Lonicera japonica HOM05D003455 ORTHO05D004165 4.4e-108 395.2 289 66.8
PGR004G0056 Punica granatum HOM05D003455 ORTHO05D004165 7.6e-108 394.4 289 68.2
GSVIVG01032900001 Vitis vinifera HOM05D003455 ORTHO05D004165 7.6e-108 394.4 289 67.1
Hma1.2p1_1555F.1_g290410 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 1.7e-107 393.3 289 67.5
QL93p0053_1015 Quercus lobata HOM05D003455 ORTHO05D004165 1.7e-107 393.3 289 67.5
MBI19_g21275_MAGBIO Magnolia biondii HOM05D003455 ORTHO05D004165 2.9e-107 392.5 289 68.2
Gorai.006G009500 Gossypium raimondii HOM05D003455 ORTHO05D004165 3.8e-107 392.1 289 68.5
MD09G1068800 Malus domestica HOM05D003455 ORTHO05D004165 3.8e-107 392.1 292 66.8
TAR371G0709 Trochodendron aralioides HOM05D003455 ORTHO05D004165 4.9e-107 391.7 289 67.1
Eucgr.I02041 Eucalyptus grandis HOM05D003455 ORTHO05D004165 6.4e-107 391.3 289 67.5
Hma1.2p1_0069F.1_g037360 Hydrangea macrophylla HOM05D003455 ORTHO05D004165 6.4e-107 391.3 289 67.5
Cpa.g.sc14.196 Carica papaya HOM05D003455 ORTHO05D004165 1.4e-106 390.2 289 68.2
QL02p067326 Quercus lobata HOM05D003455 ORTHO05D004165 1.4e-106 390.2 288 67.4
MD17G1061800 Malus domestica HOM05D003455 ORTHO05D004165 2.4e-106 389.4 289 65.4
Gohir.D09G007900 Gossypium hirsutum HOM05D003455 ORTHO05D004165 3.2e-106 389.0 289 68.2
Potri.017G095300 Populus trichocarpa HOM05D003455 ORTHO05D004165 4.2e-106 388.7 291 66.3
Manes.01G094700 Manihot esculenta HOM05D003455 ORTHO05D004165 7.1e-106 387.9 291 66.7
Sabra17G0084500 Salix brachista HOM05D003455 ORTHO05D004165 1.2e-105 387.1 291 65.6
Ca_04310_v3 Cicer arietinum L. HOM05D003455 ORTHO05D004165 1.6e-105 386.7 289 66.8
Glyma.13G055200 Glycine max HOM05D003455 ORTHO05D004165 1.6e-105 386.7 289 65.7
Psat1g068920 Pisum sativum HOM05D003455 ORTHO05D004165 1.6e-105 386.7 287 66.2
CiPaw.03G087400 Carya illinoinensis HOM05D003455 ORTHO05D004165 2.1e-105 386.3 288 66.7
MELO3C022038.2 Cucumis melo HOM05D003455 ORTHO05D004165 2.1e-105 386.3 289 66.8
Cc07_g04370 Coffea canephora HOM05D003455 ORTHO05D004165 2.7e-105 386.0 289 65.7
Medtr6g015395 Medicago truncatula HOM05D003455 ORTHO05D004165 2.7e-105 386.0 289 66.4
Aqoxy3G03656 Aquilegia oxysepala HOM05D003455 ORTHO05D004165 3.5e-105 385.6 290 68.3
Peaxi162Scf00166g00342 Petunia axillaris HOM05D003455 ORTHO05D004165 3.5e-105 385.6 289 64.7
CsaV3_5G038560 Cucumis sativus L. HOM05D003455 ORTHO05D004165 6.0e-105 384.8 289 66.4
CANSAT64G0930 Cannabis sativa HOM05D003455 ORTHO05D004165 7.9e-105 384.4 289 64.7
Manes.02G056600 Manihot esculenta HOM05D003455 ORTHO05D004165 7.9e-105 384.4 291 67.0
Sed0017731 Sechium edule HOM05D003455 ORTHO05D004165 1.0e-104 384.0 289 66.8
CiPaw.04G054200 Carya illinoinensis HOM05D003455 ORTHO05D004165 1.7e-104 383.3 288 66.7
Hund17038 Selenicereus undatus HOM05D003455 ORTHO05D004165 1.7e-104 383.3 289 66.1
ClCG11G004850 Citrullus lanatus HOM05D003455 ORTHO05D004165 2.3e-104 382.9 289 66.4
Nitab4.5_0009044g0070 Nicotiana tabacum HOM05D003455 ORTHO05D004165 3.0e-104 382.5 289 63.7
Medtr7g091480 Medicago truncatula HOM05D003455 ORTHO05D004165 5.1e-104 381.7 289 65.7
SabraUnG0001900 Salix brachista HOM05D003455 ORTHO05D004165 6.6e-104 381.3 291 64.9
CSS0027598 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 8.7e-104 380.9 289 65.1
CSS0034610 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 8.7e-104 380.9 289 65.1
Lsat_1_v5_gn_3_95981 Lactuca sativa HOM05D003455 ORTHO05D004165 8.7e-104 380.9 289 64.4
Sc26g0001300 Simmondsia chinensis HOM05D003455 ORTHO05D004165 8.7e-104 380.9 289 65.7
Lj2g0003959 Lotus japonicus HOM05D003455 ORTHO05D004165 1.1e-103 380.6 289 64.0
Phvul.007G207400 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 1.1e-103 380.6 289 63.7
Potri.004G116700 Populus trichocarpa HOM05D003455 ORTHO05D004165 1.9e-103 379.8 291 65.3
Phvul.004G038200 Phaseolus vulgaris HOM05D003455 ORTHO05D004165 3.3e-103 379.0 289 64.4
Lsat_1_v5_gn_2_89540 Lactuca sativa HOM05D003455 ORTHO05D004165 7.4e-103 377.9 289 64.0
PGSC0003DMG400001365 Solanum tuberosum HOM05D003455 ORTHO05D004165 7.4e-103 377.9 289 61.9
ECA246G2096 Erigeron canadensis HOM05D003455 ORTHO05D004165 9.6e-103 377.5 289 63.3
Nitab4.5_0000212g0320 Nicotiana tabacum HOM05D003455 ORTHO05D004165 9.6e-103 377.5 289 65.1
VMungo0720G0561 Vigna mungo HOM05D003455 ORTHO05D004165 1.3e-102 377.1 289 63.7
Glyma.20G089400 Glycine max HOM05D003455 ORTHO05D004165 1.6e-102 376.7 289 63.0
Haze_14415 Corylus avellana HOM05D003455 ORTHO05D004165 2.8e-102 375.9 324 59.9
Glyma.10G140700 Glycine max HOM05D003455 ORTHO05D004165 3.6e-102 375.6 289 63.3
ECA238G0586 Erigeron canadensis HOM05D003455 ORTHO05D004165 1.1e-101 374.0 289 63.7
Peaxi162Scf00563g00315 Petunia axillaris HOM05D003455 ORTHO05D004165 1.1e-101 374.0 289 64.4
Peaxi162Scf00991g00014 Petunia axillaris HOM05D003455 ORTHO05D004165 1.1e-101 374.0 289 64.4
TPR.G4293 Trifolium pratense HOM05D003455 ORTHO05D004165 1.1e-101 374.0 288 64.6
MSTRG.15442 Avicennia marina HOM05D003455 ORTHO05D004165 1.4e-101 373.6 289 62.6
HanXRQChr15g0472411 Helianthus annuus HOM05D003455 ORTHO05D004165 1.4e-101 373.6 289 63.7
HanXRQChr17g0546121 Helianthus annuus HOM05D003455 ORTHO05D004165 3.1e-101 372.5 289 65.1
Nitab4.5_0003932g0020 Nicotiana tabacum HOM05D003455 ORTHO05D004165 3.1e-101 372.5 289 64.0
Sopen02g033830 Solanum pennellii HOM05D003455 ORTHO05D004165 3.1e-101 372.5 289 60.9
vmacro18140 Vaccinium macrocarpon HOM05D003455 ORTHO05D004165 3.1e-101 372.5 291 63.9
AUR62013681 Chenopodium quinoa HOM05D003455 ORTHO05D004165 5.3e-101 371.7 289 63.7
arahy.Tifrunner.gnm1.ann1.87INZE Arachis hypogaea HOM05D003455 ORTHO05D004165 6.9e-101 371.3 289 62.3
arahy.Tifrunner.gnm1.ann1.S4R36H Arachis hypogaea HOM05D003455 ORTHO05D004165 9.0e-101 370.9 289 62.3
AUR62004181 Chenopodium quinoa HOM05D003455 ORTHO05D004165 9.0e-101 370.9 289 63.7
RcHm_v2.0_Chr2g0165551 Rosa chinensis HOM05D003455 ORTHO05D004165 1.5e-100 370.2 289 63.0
CSS0040085 Camellia sinensis var. sinensis HOM05D003455 ORTHO05D004165 4.5e-100 368.6 289 64.0
FvH4_6g46660 Fragaria vesca HOM05D003455 ORTHO05D004165 4.5e-100 368.6 289 63.0
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 7.6e-100 367.9 289 62.6
SGA_v2.0_scaffold154G37123 Striga asiatica HOM05D003455 ORTHO05D004165 9.9e-100 367.5 293 62.1
Migut.K01264 Erythranthe guttata HOM05D003455 ORTHO05D004165 1.7e-99 366.7 289 64.0
Solyc02g089070.3 Solanum lycopersicum HOM05D003455 ORTHO05D004165 2.9e-99 365.9 289 60.2
Oeu004418.1 Olea europaea HOM05D003455 ORTHO05D004165 6.4e-99 364.8 290 62.1
MSTRG.3364 Avicennia marina HOM05D003455 ORTHO05D004165 1.1e-98 364.0 289 62.3
Sabra04G0070200 Salix brachista HOM05D003455 ORTHO05D004165 1.1e-98 364.0 306 60.8
DCAR_011034 Daucus carota HOM05D003455 ORTHO05D004165 1.6e-97 360.1 386 50.8
FAN02G3143 Fragaria x ananassa HOM05D003455 ORTHO05D004165 6.0e-97 358.2 289 61.9
FAN05G4304 Fragaria x ananassa HOM05D003455 ORTHO05D004165 6.0e-97 358.2 289 61.9
FAN09G2387 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.8e-96 356.7 289 61.6
ATR0794G008 Amborella trichopoda HOM05D003455 ORTHO05D004165 3.9e-96 355.5 289 61.9
EL10Ac1g00859 Beta vulgaris HOM05D003455 ORTHO05D004165 6.7e-96 354.8 333 54.7
Lalb_Chr06g0174911 Lupinus albus HOM05D003455 ORTHO05D004165 3.3e-95 352.4 290 61.7
SalBow1G0092 Salvia bowleyana HOM05D003455 ORTHO05D004165 5.6e-95 351.7 289 61.2
ATR0827G178 Amborella trichopoda HOM05D003455 ORTHO05D004165 9.6e-95 350.9 289 60.2
PSO017G2371 Papaver somniferum HOM05D003455 ORTHO05D004165 2.8e-94 349.4 282 64.5
Lalb_Chr02g0158861 Lupinus albus HOM05D003455 ORTHO05D004165 3.7e-94 349.0 290 60.7
PSO478G0569 Papaver somniferum HOM05D003455 ORTHO05D004165 4.8e-94 348.6 282 64.5
unitig_748.g8420 Utricularia gibba HOM05D003455 ORTHO05D004165 2.6e-92 342.8 290 58.6
Cfa007317 Carpinus fangiana HOM05D003455 ORTHO05D004165 2.2e-91 339.7 289 60.9
SEGI_08931 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 3.8e-91 339.0 267 62.5
CAN.G497.93 Capsicum annuum HOM05D003455 ORTHO05D004165 2.7e-89 332.8 259 62.9
Zm00001eb337010 Zea mays HOM05D003455 ORTHO05D004165 7.9e-89 331.3 294 56.1
BNapus_Darmor_BZH_scaffold_113p00190 Brassica napus HOM05D003455 ORTHO05D002350 1.3e-88 330.5 219 77.2
FAN14G2996 Fragaria x ananassa HOM05D003455 ORTHO05D004165 1.8e-88 330.1 313 55.9
SMO174G0231 Selaginella moellendorffii HOM05D003455 ORTHO05D004165 5.7e-87 325.1 289 55.7
Os04g0103200 Oryza sativa ssp. japonica HOM05D003455 ORTHO05D004165 3.1e-85 319.3 295 55.3
Mapoly0097s0065 Marchantia polymorpha HOM05D003455 ORTHO05D004165 5.0e-83 312.0 289 53.6
Nitab4.5_0005596g0050 Nicotiana tabacum HOM05D003455 ORTHO05D004165 1.9e-82 310.1 289 55.0
CDE09G0770 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 9.3e-82 307.8 286 56.3
AagrBONN_evm.TU.Sc2ySwM_117.3585 Anthoceros agrestis HOM05D003455 ORTHO05D004165 1.1e-79 300.8 289 51.9
Actinidia17593 Actinidia chinensis HOM05D003455 ORTHO05D004165 2.2e-78 296.6 230 63.9
Pp3c14_18640 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.2e-76 290.8 300 49.7
Pp3c14_18645 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.2e-76 290.8 300 49.7
Peaxi162Scf00043g00181 Petunia axillaris HOM05D003455 ORTHO05D004165 7.7e-76 288.1 230 61.7
Oeu007070.2 Olea europaea HOM05D003455 ORTHO05D004165 2.9e-75 286.2 338 47.9
Pp3c17_21330 Physcomitrium patens HOM05D003455 ORTHO05D004165 5.0e-75 285.4 300 49.0
CBR_g38096 Chara braunii HOM05D003455 ORTHO05D004165 7.4e-71 271.6 281 49.5
Lalb_Chr21g0318341 Lupinus albus HOM05D003455 ORTHO05D004165 1.3e-67 260.8 293 49.5
SEGI_28709 Sequoiadendron giganteum HOM05D003455 ORTHO05D004165 2.9e-67 259.6 215 60.5
Actinidia26257 Actinidia chinensis HOM05D003455 ORTHO05D004165 2.4e-61 240.0 181 63.0
ECA247G2972 Erigeron canadensis HOM05D003455 ORTHO05D004165 5.9e-60 235.3 210 61.0
EL10As12g24037 Beta vulgaris HOM05D003455 ORTHO05D004165 1.4e-53 214.2 171 61.4
Gohir.A09G008500 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.0e-52 210.3 150 70.7
MD17G1062900 Malus domestica HOM05D003455 ORTHO05D004165 4.2e-50 202.6 215 50.2
TAR622G0123 Trochodendron aralioides HOM05D003455 ORTHO05D004165 8.8e-48 194.9 150 66.0
RcHm_v2.0_Chr2g0165331 Rosa chinensis HOM05D003455 ORTHO05D004165 1.9e-42 177.2 164 54.9
PGSC0003DMG400037406 Solanum tuberosum HOM05D003455 ORTHO05D004165 2.3e-32 143.7 170 45.9
RcHm_v2.0_Chr2g0165441 Rosa chinensis HOM05D003455 ORTHO05D004165 8.3e-30 135.2 131 58.8
RcHm_v2.0_Chr2g0165451 Rosa chinensis HOM05D003455 ORTHO05D004165 1.7e-27 127.5 93 64.5
Gohir.A09G008600 Gossypium hirsutum HOM05D003455 ORTHO05D004165 2.8e-25 120.2 74 77.0
CDE09G1009 Ceratophyllum demersum HOM05D003455 ORTHO05D004165 6.2e-25 119.0 94 62.8
TAR622G0706 Trochodendron aralioides HOM05D003455 ORTHO05D004165 1.3e-19 101.3 79 63.3
Cc00_g06870 Coffea canephora HOM05D003455 ORTHO05D004165 3.3e-18 96.7 82 63.4
MCO16G226 Micromonas commoda HOM05D003455 ORTHO05D004165 1.4e-16 91.3 288 26.4
Pp3c17_21340 Physcomitrium patens HOM05D003455 ORTHO05D004165 1.9e-13 80.9 70 48.6
PGSC0003DMG400040047 Solanum tuberosum HOM05D003455 ORTHO05D004165 7.8e-12 75.5 83 48.2
SGA_v2.0_scaffold79G25605 Striga asiatica HOM05D003455 ORTHO05D000752 7.8e-12 75.5 71 52.1
MD17G1062000 Malus domestica HOM05D003455 ORTHO05D004165 3.9e-11 73.2 55 65.5
MELO3C000027.2 Cucumis melo HOM05D003455 ORTHO05D004165 1.6e-09 67.8 45 73.3
MELO3C001701.2 Cucumis melo HOM05D003455 ORTHO05D004165 1.6e-09 67.8 45 73.3
RcHm_v2.0_Chr2g0157101 Rosa chinensis HOM05D003455 ORTHO05D004165 8.1e-09 65.5 44 72.7
HanXRQChr04g0103071 Helianthus annuus HOM05D003455 ORTHO05D004165 2.9e-06 57.0 43 65.1


User provided reference genes

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