Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 9.3e-26 119.4 59 100.0
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 98.3
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.9e-25 116.3 59 98.3
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.9e-25 116.3 59 98.3
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.8e-24 115.2 59 96.6
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 5.1e-24 113.6 59 93.2
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 3.3e-23 110.9 59 91.5
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 5.7e-23 110.2 59 91.5
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 5.7e-23 110.2 59 91.5
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 89.8
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 88.1
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 2.2e-22 108.2 59 89.8
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.2e-19 98.2 59 84.7
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.2e-19 98.2 59 84.7
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 2.2e-19 98.2 59 81.4
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 2.2e-19 98.2 59 84.7
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 2.2e-19 98.2 59 84.7
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 6.5e-19 96.7 59 81.4
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.5e-19 96.7 59 81.4
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.5e-19 96.7 59 81.4
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.5e-19 96.7 59 81.4
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.5e-19 96.7 59 81.4
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.9e-18 95.1 59 79.7
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 2.5e-18 94.7 59 79.7
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 2.5e-18 94.7 59 81.4
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 3.2e-18 94.4 60 78.3
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 5.5e-18 93.6 59 78.0
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 5.5e-18 93.6 59 79.7
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 5.5e-18 93.6 59 79.7
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.5e-18 93.6 59 78.0
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 7.2e-18 93.2 59 79.7
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 7.2e-18 93.2 59 78.0
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 7.2e-18 93.2 59 79.7
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 7.2e-18 93.2 59 79.7
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.2e-17 92.4 59 78.0
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 2.1e-17 91.7 59 78.0
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 2.1e-17 91.7 59 76.3
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.1e-17 91.7 59 78.0
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.1e-17 91.7 59 78.0
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 3.6e-17 90.9 57 78.9
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 3.6e-17 90.9 56 80.4
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.6e-17 90.5 60 76.7
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.6e-17 90.5 60 76.7
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 4.6e-17 90.5 59 76.3
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 7.9e-17 89.7 59 74.6
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.0e-16 89.4 59 72.9
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 78.6
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 78.6
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 1.4e-16 89.0 59 76.3
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 76.8
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 76.8
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.8e-16 88.6 59 76.3
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.8e-16 88.6 54 85.2
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 2.3e-16 88.2 60 78.3
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 2.3e-16 88.2 58 75.9
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 3.0e-16 87.8 60 73.3
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 3.9e-16 87.4 58 74.1
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 5.1e-16 87.0 60 76.7
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 6.7e-16 86.7 60 73.3
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 8.8e-16 86.3 56 76.8
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 1.1e-15 85.9 56 75.0
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.9e-15 85.1 58 70.7
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.9e-15 85.1 61 70.5
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.9e-15 85.1 61 70.5
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.5e-15 84.7 61 70.5
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 2.5e-15 84.7 61 70.5
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 3.3e-15 84.3 59 72.9
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 7.4e-15 83.2 50 82.0
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 2.2e-14 81.6 56 73.2
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.2e-14 81.6 61 70.5
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 3.7e-14 80.9 61 68.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.8e-14 80.5 50 78.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 4.8e-14 80.5 61 68.9
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 6.3e-14 80.1 61 68.9
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 6.3e-14 80.1 61 67.2
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 8.2e-14 79.7 61 68.9
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 8.2e-14 79.7 61 68.9
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 8.2e-14 79.7 57 75.4
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.1e-13 79.3 61 65.6
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.4e-13 79.0 61 65.6
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 1.4e-13 79.0 61 67.2
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.9e-13 76.6 47 78.7
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 1.2e-12 75.9 49 71.4
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 4.5e-12 73.9 56 66.1
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 4.5e-12 73.9 59 66.1
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 7.7e-12 73.2 57 61.4
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 1.0e-11 72.8 59 66.1
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.7e-11 72.0 59 66.1
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.2e-11 71.6 53 66.0
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 8.5e-11 69.7 51 66.7
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-10 69.3 51 66.7
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 2.5e-10 68.2 49 71.4
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.6e-09 65.5 59 57.6
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 2.7e-09 64.7 56 55.4
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 2.7e-09 64.7 53 62.3
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 7.9e-09 63.2 59 54.2
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-08 62.8 54 57.4
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-08 62.8 48 62.5
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-08 62.8 48 62.5
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.0e-08 62.8 52 57.7
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.0e-08 62.8 51 60.8
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.4e-08 62.4 51 62.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 1.4e-08 62.4 48 64.6
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.4e-08 62.4 51 62.7
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.8e-08 62.0 47 66.0
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 2.3e-08 61.6 53 58.5
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 3.9e-08 60.8 51 58.8
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 5.1e-08 60.5 49 59.2
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.7e-08 60.1 50 60.0
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 8.8e-08 59.7 55 50.9
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 4.4e-07 57.4 49 59.2
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 6.3e-06 53.5 48 52.1


User provided reference genes

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