Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 9.8e-33 143.3 96 100.0
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 8.3e-32 140.2 96 97.9
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 8.3e-32 140.2 96 97.9
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 1.6e-30 136.0 96 96.9
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 1.6e-30 136.0 96 96.9
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 2.0e-30 135.6 96 95.8
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 5.8e-25 117.5 97 87.6
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 1.6e-22 109.4 98 63.3
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 2.7e-22 108.6 96 86.5
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 2.7e-22 108.6 96 86.5
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 2.7e-22 108.6 96 86.5
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 4.6e-22 107.8 97 64.9
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 4.6e-22 107.8 96 84.4
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 1.3e-21 106.3 97 61.9
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 4.3e-20 101.3 99 82.8
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 1.2e-17 93.2 56 80.4
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 4.4e-17 91.3 93 49.5
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.9e-16 87.8 90 46.7
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.9e-16 87.8 90 46.7
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 4.9e-16 87.8 90 46.7
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 6.4e-16 87.4 94 46.8
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 1.4e-15 86.3 95 47.4
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 2.4e-15 85.5 86 51.2
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 4.1e-15 84.7 102 67.6
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 6.0e-14 80.9 90 50.0
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 7.8e-14 80.5 90 47.8
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 5.1e-13 77.8 89 43.8
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 6.6e-13 77.4 91 47.3
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 8.6e-13 77.0 94 44.7
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 8.6e-13 77.0 95 45.3
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 1.1e-12 76.6 90 44.4
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.1e-12 76.6 91 46.2
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 4.3e-12 74.7 92 45.7
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 4.3e-12 74.7 98 52.0
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 4.3e-12 74.7 91 46.2
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 4.3e-12 74.7 95 49.5
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 9.6e-12 73.6 108 51.9
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 9.6e-12 73.6 93 44.1
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 1.2e-11 73.2 109 41.3
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 1.6e-11 72.8 94 43.6
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 2.8e-11 72.0 57 61.4
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 2.8e-11 72.0 94 42.6
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 2.8e-11 72.0 51 66.7
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 6.2e-11 70.9 98 52.0
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 1.1e-10 70.1 56 57.1
Cc07_g16300 Coffea canephora HOM05D002917 ORTHO05D002431 3.1e-10 68.6 93 49.5
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 3.1e-10 68.6 57 57.9
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 4.0e-10 68.2 87 42.5
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 6.8e-10 67.4 95 41.1
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 1.2e-09 66.6 95 40.0
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.2e-09 66.6 95 40.0
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.2e-09 66.6 95 40.0
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 1.2e-09 66.6 54 61.1
CSS0021781 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.5e-09 66.2 89 52.8
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 1.5e-09 66.2 92 42.4
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 2.0e-09 65.9 55 52.7
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 2.0e-09 65.9 94 50.0
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 3.4e-09 65.1 89 40.4
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 3.4e-09 65.1 56 50.0
Hma1.2p1_0375F.1_g138750 Hydrangea macrophylla HOM05D002917 ORTHO05D002431 3.4e-09 65.1 93 37.6
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.4e-09 65.1 97 37.1
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 4.4e-09 64.7 55 58.2
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 5.8e-09 64.3 56 57.1
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 5.8e-09 64.3 56 57.1
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 5.8e-09 64.3 56 57.1
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 5.8e-09 64.3 55 50.9
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 7.6e-09 63.9 52 55.8
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 7.6e-09 63.9 50 58.0
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 9.9e-09 63.5 57 54.4
Glyma.04G219000 Glycine max HOM05D002917 ORTHO05D002431 9.9e-09 63.5 95 38.9
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 9.9e-09 63.5 124 41.1
Prupe.6G172200 Prunus persica HOM05D002917 ORTHO05D002431 9.9e-09 63.5 94 40.4
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 9.9e-09 63.5 57 56.1
Sed0016541 Sechium edule HOM05D002917 ORTHO05D002431 9.9e-09 63.5 56 58.9
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 1.3e-08 63.2 89 37.1
MSTRG.2528 Avicennia marina HOM05D002917 ORTHO05D002431 1.7e-08 62.8 94 38.3
MD15G1332200 Malus domestica HOM05D002917 ORTHO05D002431 2.2e-08 62.4 93 39.8
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.2e-08 62.4 97 37.1
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 2.9e-08 62.0 55 56.4
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 2.9e-08 62.0 96 38.5
MD01G1020100 Malus domestica HOM05D002917 ORTHO05D002431 2.9e-08 62.0 93 39.8
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.9e-08 62.0 95 37.9
Rhsim10G0149900 Rhododendron simsii HOM05D002917 ORTHO05D002431 2.9e-08 62.0 55 58.2
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 2.9e-08 62.0 107 46.7
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 2.9e-08 62.0 51 54.9
TWI53G0786 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 3.8e-08 61.6 95 49.5
CANSAT01G0734 Cannabis sativa HOM05D002917 ORTHO05D002431 4.9e-08 61.2 55 54.5
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 4.9e-08 61.2 96 37.5
CsaV3_6G042410 Cucumis sativus L. HOM05D002917 ORTHO05D002431 4.9e-08 61.2 57 56.1
Dinv42690 Davidia involucrata HOM05D002917 ORTHO05D002431 4.9e-08 61.2 56 57.1
Nn5g28892 Nelumbo nucifera HOM05D002917 ORTHO05D002431 4.9e-08 61.2 53 58.5
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 4.9e-08 61.2 55 54.5
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 4.9e-08 61.2 93 37.6
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 6.4e-08 60.8 86 39.5
CARHR278860 Cardamine hirsuta HOM05D002917 ORTHO05D002431 6.4e-08 60.8 54 55.6
Dinv19484 Davidia involucrata HOM05D002917 ORTHO05D002431 6.4e-08 60.8 93 38.7
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 6.4e-08 60.8 93 36.6
Phvul.009G139200 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 6.4e-08 60.8 57 54.4
VMungo1309G1910 Vigna mungo HOM05D002917 ORTHO05D002431 6.4e-08 60.8 57 54.4
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 8.4e-08 60.5 97 52.6
MELO3C020960.2 Cucumis melo HOM05D002917 ORTHO05D002431 8.4e-08 60.5 96 37.5
ECA238G1147 Erigeron canadensis HOM05D002917 ORTHO05D002431 8.4e-08 60.5 95 36.8
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 8.4e-08 60.5 94 37.2
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 8.4e-08 60.5 95 38.9
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.1e-07 60.1 47 61.7
CSS0046773 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.1e-07 60.1 93 55.9
Carub.0008s2568 Capsella rubella HOM05D002917 ORTHO05D002431 1.1e-07 60.1 54 53.7
DCAR_014262 Daucus carota HOM05D002917 ORTHO05D002431 1.1e-07 60.1 93 38.7
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 1.1e-07 60.1 57 54.4
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 1.1e-07 60.1 57 54.4
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 1.1e-07 60.1 94 37.2
MELO3C007484.2 Cucumis melo HOM05D002917 ORTHO05D002431 1.4e-07 59.7 55 56.4
Nn1g05176 Nelumbo nucifera HOM05D002917 ORTHO05D002431 1.4e-07 59.7 93 52.7
Peaxi162Scf00133g01414 Petunia axillaris HOM05D002917 ORTHO05D002431 1.4e-07 59.7 95 37.9
Potri.005G084700 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.4e-07 59.7 96 55.2
TAR625G0139 Trochodendron aralioides HOM05D002917 ORTHO05D002431 1.4e-07 59.7 58 53.4
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea HOM05D002917 ORTHO05D002431 1.9e-07 59.3 57 54.4
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 1.9e-07 59.3 96 37.5
Lalb_Chr08g0238811 Lupinus albus HOM05D002917 ORTHO05D002431 1.9e-07 59.3 57 56.1
Potri.007G080800 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.9e-07 59.3 98 53.1
SalBow5G5446 Salvia bowleyana HOM05D002917 ORTHO05D002431 1.9e-07 59.3 94 46.8
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea HOM05D002917 ORTHO05D002431 2.4e-07 58.9 57 52.6
CSS0004580 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.4e-07 58.9 55 54.5
Glyma.08G142000 Glycine max HOM05D002917 ORTHO05D002431 2.4e-07 58.9 96 35.4
QL06p032044 Quercus lobata HOM05D002917 ORTHO05D002431 2.4e-07 58.9 52 57.7
Lsat_1_v5_gn_4_137421 Lactuca sativa HOM05D002917 ORTHO05D002431 3.2e-07 58.5 57 50.9
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.2e-07 58.5 102 48.0
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 4.2e-07 58.2 100 50.0
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 4.2e-07 58.2 54 51.9
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 4.2e-07 58.2 54 51.9
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 4.2e-07 58.2 54 51.9
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 4.2e-07 58.2 54 55.6
Haze_25049 Corylus avellana HOM05D002917 ORTHO05D002431 4.2e-07 58.2 57 52.6
Gohir.A05G071850 Gossypium hirsutum HOM05D032020 ORTHO05D002431 4.2e-07 58.2 48 52.1
Phvul.002G265100 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 4.2e-07 58.2 95 34.7
Sabra07G0067800 Salix brachista HOM05D002917 ORTHO05D002431 4.2e-07 58.2 54 55.6
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 4.2e-07 58.2 91 37.4
Actinidia28896 Actinidia chinensis HOM05D002917 ORTHO05D002431 5.4e-07 57.8 94 61.7
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 5.4e-07 57.8 47 59.6
ClCG01G016140 Citrullus lanatus HOM05D002917 ORTHO05D002431 5.4e-07 57.8 53 56.6
HanXRQChr09g0259721 Helianthus annuus HOM05D002917 ORTHO05D002431 5.4e-07 57.8 100 45.0
AL8G42330 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 7.1e-07 57.4 54 53.7
AT5G64850 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 7.1e-07 57.4 54 53.7
Lj1g0001228 Lotus japonicus HOM05D002917 ORTHO05D002431 7.1e-07 57.4 56 53.6
Lj4g0006175 Lotus japonicus HOM05D002917 ORTHO05D002431 7.1e-07 57.4 95 34.7
PGSC0003DMG400016551 Solanum tuberosum HOM05D002917 ORTHO05D002431 7.1e-07 57.4 56 51.8
SGA_v2.0_scaffold51G18757 Striga asiatica HOM05D002917 ORTHO05D000111 7.1e-07 57.4 56 53.6
Thecc.01G113600 Theobroma cacao HOM05D002917 ORTHO05D002431 7.1e-07 57.4 94 47.9
TWI74G1161 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 7.1e-07 57.4 55 54.5
TAR628G1039 Trochodendron aralioides HOM05D002917 ORTHO05D002431 7.1e-07 57.4 93 45.2
Cpa.g.sc191.8 Carica papaya HOM05D002917 ORTHO05D002431 9.3e-07 57.0 94 36.2
Psat7g051000 Pisum sativum HOM05D002917 ORTHO05D002431 9.3e-07 57.0 97 46.4
Sc03g0004380 Simmondsia chinensis HOM05D002917 ORTHO05D002431 9.3e-07 57.0 93 35.5
Thhalv10005264m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 1.2e-06 56.6 54 51.9
TPR.G2220 Trifolium pratense HOM05D002917 ORTHO05D002431 1.2e-06 56.6 52 51.9
GSVIVG01022234001 Vitis vinifera HOM05D002917 ORTHO05D002431 1.2e-06 56.6 53 56.6
Actinidia33358 Actinidia chinensis HOM05D002917 ORTHO05D002431 1.6e-06 56.2 55 52.7
ECA232G3996 Erigeron canadensis HOM05D002917 ORTHO05D002431 1.6e-06 56.2 56 51.8
Manes.12G143000 Manihot esculenta HOM05D002917 ORTHO05D002431 1.6e-06 56.2 97 34.0
COL.COLO4_11006 Corchorus olitorius HOM05D002917 ORTHO05D002431 2.1e-06 55.8 54 53.7
Glyma.05G184200 Glycine max HOM05D002917 ORTHO05D002431 2.1e-06 55.8 56 50.0
SGA_v2.0_scaffold47G17704 Striga asiatica HOM05D002917 ORTHO05D002431 2.1e-06 55.8 53 56.6
Migut.H02440 Erythranthe guttata HOM05D002917 ORTHO05D002431 2.7e-06 55.5 93 36.6
Lalb_Chr13g0296221 Lupinus albus HOM05D002917 ORTHO05D002431 2.7e-06 55.5 56 48.2
Nitab4.5_0000818g0190 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.7e-06 55.5 56 50.0
PGR004G1449 Punica granatum HOM05D002917 ORTHO05D002431 2.7e-06 55.5 53 52.8
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 2.7e-06 55.5 45 60.0
vmacro12899 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 2.7e-06 55.5 91 37.4
arahy.Tifrunner.gnm1.ann1.CBHP4D Arachis hypogaea HOM05D002917 ORTHO05D002431 3.5e-06 55.1 54 50.0
A10p09020 Brassica napus HOM05D002917 ORTHO05D002431 3.5e-06 55.1 52 51.9
CiPaw.03G134100 Carya illinoinensis HOM05D002917 ORTHO05D002431 3.5e-06 55.1 54 51.9
Ciclev10026820m.g Citrus clementina HOM05D002917 ORTHO05D002431 3.5e-06 55.1 54 51.9
Gohir.A02G135500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 3.5e-06 55.1 95 46.3
Gohir.D03G046500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 3.5e-06 55.1 95 46.3
Medtr8g091930 Medicago truncatula HOM05D002917 ORTHO05D002431 3.5e-06 55.1 52 50.0
Sed0016172 Sechium edule HOM05D002917 ORTHO05D002431 3.5e-06 55.1 94 35.1
DCAR_001372 Daucus carota HOM05D002917 ORTHO05D002431 4.6e-06 54.7 89 34.8
Gorai.003G047500 Gossypium raimondii HOM05D002917 ORTHO05D002431 4.6e-06 54.7 54 51.9
vmacro18635 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 4.6e-06 54.7 53 52.8
EL10Ac6g14757 Beta vulgaris HOM05D002917 ORTHO05D002431 6.0e-06 54.3 93 35.5
Duzib187G0794 Durio zibethinus HOM05D002917 ORTHO05D002431 6.0e-06 54.3 54 51.9
VMungo0251G0645 Vigna mungo HOM05D002917 ORTHO05D002431 6.0e-06 54.3 56 48.2
CAN.G1056.1 Capsicum annuum HOM05D002917 ORTHO05D002431 7.8e-06 53.9 53 50.9
HanXRQChr14g0446091 Helianthus annuus HOM05D002917 ORTHO05D002431 7.8e-06 53.9 56 48.2
TPR.G23761 Trifolium pratense HOM05D002917 ORTHO05D002431 7.8e-06 53.9 96 34.4


User provided reference genes

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