Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.8e-130 469.2 226 100.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-122 443.4 226 92.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 4.1e-122 441.4 226 92.5
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.4e-122 441.0 226 92.5
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 9.1e-122 440.3 226 92.5
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.4e-114 416.4 224 87.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.5e-111 406.4 222 83.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.6e-111 404.4 222 83.3
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 5.8e-108 394.4 222 80.6
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 7.5e-108 394.0 222 81.5
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 8.3e-107 390.6 222 80.6
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 7.0e-106 387.5 226 81.9
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.7e-105 385.6 224 81.2
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 6.0e-105 384.4 222 81.1
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 3.0e-104 382.1 226 80.5
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.5e-100 369.8 222 77.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.6e-89 331.6 224 67.9
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.4e-85 319.3 224 68.3
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.7e-75 286.6 230 60.0
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 4.2e-74 282.0 170 74.7
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 4.2e-74 282.0 170 74.7
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 5.4e-74 281.6 228 59.6
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.0e-72 277.3 228 58.8
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.7e-72 276.6 228 57.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 3.0e-72 275.8 217 59.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 5.1e-72 275.0 229 57.2
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 8.7e-72 274.2 228 56.6
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 8.7e-72 274.2 230 57.4
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.5e-71 272.7 220 58.6
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 4.3e-71 271.9 229 57.2
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 4.3e-71 271.9 224 58.5
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.3e-70 270.4 222 55.4
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.6e-70 270.0 222 55.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 2.1e-70 269.6 228 55.7
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 2.8e-70 269.2 229 55.9
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.8e-70 269.2 225 57.3
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.6e-70 268.9 228 56.1
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 4.8e-70 268.5 228 55.3
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 6.2e-70 268.1 228 54.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.1e-69 267.3 225 56.9
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.8e-69 266.5 225 56.4
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 2.4e-69 266.2 215 57.7
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 2.4e-69 266.2 226 56.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.0e-69 265.4 230 56.1
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.2e-68 263.8 229 56.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.2e-68 263.8 225 56.4
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 1.5e-68 263.5 227 57.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.5e-68 263.5 225 56.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 2.0e-68 263.1 228 55.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.4e-68 262.3 224 54.9
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 4.5e-68 261.9 225 55.6
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.5e-68 261.9 229 56.3
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.9e-68 260.8 228 54.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.3e-67 260.4 229 58.5
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.3e-67 260.4 223 57.4
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.7e-67 260.0 228 53.9
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 2.2e-67 259.6 228 55.7
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.2e-67 259.6 225 55.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.9e-67 258.5 230 55.2
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.4e-67 257.7 224 54.9
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.9e-66 256.5 227 54.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.5e-66 255.0 223 55.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 5.5e-66 255.0 223 52.9
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 9.3e-66 254.2 228 54.4
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-65 253.8 222 56.3
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.2e-65 253.8 226 54.9
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.1e-65 253.1 230 53.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.1e-65 253.1 222 55.0
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 54.8
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.7e-65 252.7 228 53.5
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.6e-65 251.9 231 57.1
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 6.0e-65 251.5 215 53.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.0e-65 251.5 231 56.7
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.9e-65 251.1 200 56.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.0e-64 250.8 223 52.0
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.0e-64 250.8 230 55.2
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.0e-64 250.8 224 53.6
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.8e-64 250.0 231 56.7
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.0e-64 249.2 201 57.2
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.7e-64 248.1 231 56.3
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.5e-63 246.9 226 53.5
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.5e-63 246.9 220 54.1
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.9e-63 246.5 223 51.1
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.3e-63 245.7 226 52.7
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 3.3e-63 245.7 226 51.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 7.4e-63 244.6 224 48.7
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.3e-62 243.8 228 53.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.6e-62 243.4 204 56.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 3.7e-62 242.3 222 52.7
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.4e-61 240.4 228 55.3
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 7.6e-60 234.6 218 52.8
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.9e-59 231.9 227 51.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-58 230.3 225 51.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.5e-58 228.4 228 53.1
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 3.0e-56 222.6 226 50.0
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.3e-55 218.8 181 58.6
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.1e-54 216.5 222 48.6
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.1e-50 204.1 225 44.0
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.2e-50 202.2 251 42.2
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.1e-49 199.9 227 49.8
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.1e-49 199.9 221 48.0
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-49 199.5 219 48.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 2.6e-44 183.0 238 39.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.4e-44 182.6 239 41.4
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.0e-43 181.0 238 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.8e-43 179.1 228 40.4
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.8e-43 179.1 246 37.0
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.4e-42 177.2 253 37.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.9e-42 176.8 229 42.4
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.1e-41 173.3 228 41.2
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-41 172.9 230 42.6
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 4.6e-41 172.2 188 43.1
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.1e-41 171.8 253 37.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-40 170.2 230 38.3
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.3e-40 169.9 136 59.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-39 166.0 228 37.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.3e-39 165.6 201 43.3
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 8.2e-38 161.4 224 37.9
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-37 161.0 225 36.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-37 160.2 266 34.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.2e-36 157.5 182 43.4
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.5e-36 157.1 228 36.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.5e-36 157.1 146 47.9
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.2e-35 153.3 236 36.9
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.9e-35 152.9 263 33.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 5.0e-35 152.1 263 32.7
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 8.5e-35 151.4 232 35.8
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 3.2e-34 149.4 215 37.7
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.4e-34 147.9 263 32.7
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.7e-33 146.4 222 36.9
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.5e-31 140.6 187 38.0
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.5e-31 140.6 255 32.9
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 9.7e-31 137.9 211 37.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-30 137.5 215 39.5
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 2.2e-30 136.7 151 43.0
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.8e-30 136.3 195 36.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 8.2e-30 134.8 155 43.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.2e-30 134.8 254 32.7
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 8.2e-30 134.8 226 32.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.1e-29 132.9 225 35.6
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 3.1e-29 132.9 140 45.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 7.0e-29 131.7 150 43.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.5e-28 129.4 139 43.2
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.5e-28 129.0 225 35.1
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.0e-27 125.6 143 44.8
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.9e-26 123.6 315 28.3
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.2e-26 121.7 271 29.9
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.0e-24 117.9 102 52.0
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.7e-24 115.2 140 42.9
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.6e-23 113.2 110 42.7
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.2e-22 108.2 211 30.3
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 5.3e-21 105.5 143 37.8
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.0e-20 103.6 143 38.5
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.0e-20 103.6 144 39.6
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.7e-20 103.2 190 37.4
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.2e-18 96.3 151 32.5
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.7e-17 93.2 110 39.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.8e-16 88.6 213 30.0
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-15 85.1 77 45.5
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 8.5e-11 71.6 203 29.6
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.4e-10 68.2 98 33.7
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 8.0e-09 65.1 112 33.9
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.5e-07 60.8 51 47.1
Pp3c25_3200 Physcomitrium patens HOM05D001292 ORTHO05D001202 2.0e-07 60.5 213 24.4
unitig_8.g4849 Utricularia gibba HOM05D001292 ORTHO05D001202 2.6e-07 60.1 184 22.3
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-07 58.5 92 40.2
Migut.N02858 Erythranthe guttata HOM05D001292 ORTHO05D001202 9.8e-07 58.2 254 22.8
SGA_v2.0_scaffold48G17832 Striga asiatica HOM05D001292 ORTHO05D001202 9.8e-07 58.2 214 22.9
MSTRG.24428 Avicennia marina HOM05D001292 ORTHO05D001202 1.3e-06 57.8 206 22.3
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 2.8e-06 56.6 205 25.9


User provided reference genes

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