Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 1.8e-82 309.3 167 100.0
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-56 223.4 152 82.9
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 2.2e-56 222.6 152 82.2
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 2.2e-56 222.6 153 82.4
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 2.9e-56 222.2 152 82.2
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 3.8e-56 221.9 152 82.2
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 3.8e-56 221.9 152 82.2
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 3.8e-56 221.9 152 82.2
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.1e-55 220.3 152 81.6
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.1e-55 220.3 152 81.6
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 4.2e-55 218.4 152 81.6
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 2.3e-53 212.6 152 77.0
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 3.0e-53 212.2 152 77.6
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 3.9e-53 211.8 152 77.0
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 1.6e-51 206.5 154 76.0
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 2.8e-51 205.7 153 75.2
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 6.5e-48 194.5 153 71.2
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 9.3e-47 190.7 152 69.1
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 6.9e-42 174.5 155 63.9
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-40 170.2 154 65.6
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-40 170.2 154 65.6
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 1.3e-40 170.2 154 65.6
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 3.8e-40 168.7 154 64.9
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.8e-40 168.7 154 65.6
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 7.2e-39 164.5 154 62.3
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 2.7e-38 162.5 155 63.9
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 3.6e-38 162.2 155 61.9
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 4.6e-38 161.8 154 62.3
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 6.1e-38 161.4 155 61.9
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 7.9e-38 161.0 159 62.3
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.4e-37 160.2 155 63.2
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 1.8e-37 159.8 155 62.6
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.3e-37 159.5 154 62.3
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 3.0e-37 159.1 155 63.2
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 5.1e-37 158.3 154 61.0
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 8.8e-37 157.5 154 61.7
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 8.8e-37 157.5 151 62.9
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 8.8e-37 157.5 155 61.9
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 1.1e-36 157.1 151 63.6
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.5e-36 156.8 154 61.0
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.5e-36 156.8 154 60.4
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 3.3e-36 155.6 154 61.7
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 3.3e-36 155.6 94 90.4
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 5.7e-36 154.8 155 60.0
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 5.7e-36 154.8 153 62.1
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 7.4e-36 154.5 154 61.0
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 1.3e-35 153.7 154 61.7
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.7e-35 153.3 151 62.9
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.2e-35 152.9 155 61.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 2.2e-35 152.9 155 61.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 2.2e-35 152.9 155 61.3
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 2.2e-35 152.9 156 60.3
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 2.2e-35 152.9 153 62.1
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 2.8e-35 152.5 155 60.6
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 2.8e-35 152.5 155 60.6
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 3.7e-35 152.1 151 60.3
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 4.8e-35 151.8 155 61.3
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 6.3e-35 151.4 155 61.3
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 8.2e-35 151.0 146 63.0
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.1e-34 150.6 155 58.7
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 1.4e-34 150.2 162 57.4
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 1.4e-34 150.2 155 61.3
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 1.8e-34 149.8 147 61.2
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 2.4e-34 149.4 155 60.0
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 3.1e-34 149.1 154 59.7
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 4.1e-34 148.7 146 62.3
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 9.1e-34 147.5 157 58.0
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.2e-33 147.1 161 56.5
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 5.9e-33 144.8 155 58.7
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 7.7e-33 144.4 163 57.1
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 1.3e-32 143.7 161 55.3
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 2.2e-32 142.9 155 58.1
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 2.2e-32 142.9 155 56.1
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 3.8e-32 142.1 155 56.8
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 3.8e-32 142.1 161 54.7
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 3.8e-32 142.1 133 63.2
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 3.8e-32 142.1 144 59.7
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.1e-31 140.6 159 57.9
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.4e-31 140.2 161 55.9
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 1.9e-31 139.8 155 56.8
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 1.9e-31 139.8 161 54.0
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 2.5e-31 139.4 155 58.1
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 3.2e-31 139.0 155 55.5
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 4.2e-31 138.7 155 56.1
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 9.4e-31 137.5 155 55.5
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 1.6e-30 136.7 146 57.5
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 2.7e-30 136.0 144 54.9
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 5.1e-29 131.7 138 62.3
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 4.8e-27 125.2 156 53.8
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 6.3e-27 124.8 141 56.7
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 1.4e-26 123.6 153 51.0
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 2.4e-26 122.9 134 57.5
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 4.1e-26 122.1 168 52.4
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 6.9e-26 121.3 148 52.7
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 9.1e-26 120.9 148 53.4
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 1.5e-25 120.2 154 50.0
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 3.4e-25 119.0 131 59.5
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 5.9e-25 118.2 131 59.5
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.0e-24 117.5 124 56.5
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.3e-24 117.1 152 52.0
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 2.2e-24 116.3 117 59.0
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 6.5e-24 114.8 120 59.2
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 1.9e-23 113.2 65 96.9
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 5.5e-23 111.7 65 95.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 7.2e-23 111.3 97 69.1
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 1.6e-22 110.2 153 48.4
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 2.1e-22 109.8 65 93.8
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 6.1e-22 108.2 66 93.9
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 1.4e-21 107.1 65 90.8
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.4e-21 107.1 155 52.9
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 5.2e-21 105.1 65 90.8
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.1e-20 104.0 98 68.4
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.5e-20 103.6 65 92.3
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 2.0e-20 103.2 98 63.3
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 1.2e-17 94.0 158 41.8
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 1.6e-14 83.6 98 59.2
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 4.7e-14 82.0 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 8.0e-14 81.3 132 43.2
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 1.0e-13 80.9 47 95.7
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 1.8e-13 80.1 49 87.8
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 2.3e-13 79.7 130 43.1
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 4.0e-13 79.0 153 45.8
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 4.0e-13 79.0 47 93.6
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 4.0e-13 79.0 60 70.0
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 1.5e-12 77.0 47 89.4
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 2.4e-10 69.7 81 63.0
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-08 63.5 90 54.4
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 3.8e-08 62.4 85 58.8
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 1.9e-07 60.1 64 68.8
BcaC02g09329 Brassica carinata HOM05D005631 ORTHO05D006765 4.2e-07 58.9 64 60.9
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 7.2e-07 58.2 40 80.0
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 1.6e-06 57.0 97 49.5
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 2.7e-06 56.2 144 36.1
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 3.6e-06 55.8 88 45.5


User provided reference genes

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