Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04385 Brassica carinata HOM05D005207 ORTHO05D094505 3.8e-148 528.1 259 100.0
C03p16000 Brassica napus HOM05D000174 ORTHO05D000630 9.7e-43 177.9 176 56.2
C06p50450 Brassica napus HOM05D005207 ORTHO05D010629 2.6e-19 100.1 176 29.5
BcaB06g29180 Brassica carinata HOM05D005207 ORTHO05D010629 7.5e-19 98.6 140 33.6
A07p41910 Brassica napus HOM05D005207 ORTHO05D010629 2.2e-18 97.1 176 29.0
C06p50330 Brassica napus HOM05D005207 ORTHO05D010629 2.2e-18 97.1 176 29.5
C06p50380 Brassica napus HOM05D005207 ORTHO05D010629 2.2e-18 97.1 176 29.5
C06p50420 Brassica napus HOM05D005207 ORTHO05D010629 2.2e-18 97.1 176 29.5
BraA07t31720Z Brassica rapa HOM05D005207 ORTHO05D010629 6.3e-18 95.5 176 29.0
BcaC08g47266 Brassica carinata HOM05D005207 ORTHO05D010629 1.4e-17 94.4 176 29.5
BraA04t17858Z Brassica rapa HOM05D005207 ORTHO05D010629 1.4e-17 94.4 206 30.1
BcaB01g06024 Brassica carinata HOM05D005207 ORTHO05D010629 2.4e-17 93.6 239 29.3
C03p03250 Brassica napus HOM05D005207 ORTHO05D016117 4.1e-17 92.8 209 33.0
BolC3t12869H Brassica oleracea HOM05D005207 ORTHO05D016117 4.1e-17 92.8 209 33.0
A04p23290 Brassica napus HOM05D005207 ORTHO05D010629 9.1e-17 91.7 181 30.9
BcaB01g06028 Brassica carinata HOM05D005207 ORTHO05D016117 2.0e-16 90.5 209 32.5
C03p03300 Brassica napus HOM05D005207 ORTHO05D016117 2.0e-16 90.5 209 32.5
BolC3t12873H Brassica oleracea HOM05D005207 ORTHO05D016117 2.0e-16 90.5 209 32.5
BolC6t40070H Brassica oleracea HOM05D005207 ORTHO05D010629 2.7e-16 90.1 178 29.8
BcaC02g08007 Brassica carinata HOM05D005207 ORTHO05D010629 3.5e-16 89.7 181 30.4
BcaC02g08009 Brassica carinata HOM05D005207 ORTHO05D010629 3.5e-16 89.7 181 30.4
A03p02850 Brassica napus HOM05D005207 ORTHO05D016117 4.5e-16 89.4 209 32.1
BraA03t09649Z Brassica rapa HOM05D005207 ORTHO05D016117 4.5e-16 89.4 209 32.1
C04p59480 Brassica napus HOM05D005207 ORTHO05D010629 5.9e-16 89.0 178 30.3
A03p02860 Brassica napus HOM05D005207 ORTHO05D016117 7.7e-16 88.6 211 32.2
BraA03t09648Z Brassica rapa HOM05D005207 ORTHO05D016117 7.7e-16 88.6 211 32.2
BcaB01g06000 Brassica carinata HOM05D005207 ORTHO05D010629 1.0e-15 88.2 209 31.6
C04p59240 Brassica napus HOM05D005207 ORTHO05D010629 1.0e-15 88.2 178 31.5
BolC4t27435H Brassica oleracea HOM05D005207 ORTHO05D010629 1.0e-15 88.2 178 31.5
BcaC02g12854 Brassica carinata HOM05D005207 ORTHO05D010629 1.3e-15 87.8 189 30.2
C03p03270 Brassica napus HOM05D005207 ORTHO05D016117 2.3e-15 87.0 212 32.5
BolC3t12870H Brassica oleracea HOM05D005207 ORTHO05D016117 2.3e-15 87.0 212 32.5
A04p30470 Brassica napus HOM05D005207 ORTHO05D010629 2.9e-15 86.7 157 30.6
C04p59500 Brassica napus HOM05D005207 ORTHO05D010629 5.0e-15 85.9 181 29.8
BraA04t18460Z Brassica rapa HOM05D005207 ORTHO05D010629 2.5e-14 83.6 137 31.4
AL1G25630 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.3e-14 83.2 181 29.3
BcaC07g42014 Brassica carinata HOM05D005207 ORTHO05D024328 3.3e-14 83.2 209 31.6
C08p50700 Brassica napus HOM05D005207 ORTHO05D024328 3.3e-14 83.2 209 31.6
BolC8t52598H Brassica oleracea HOM05D005207 ORTHO05D024328 3.3e-14 83.2 209 31.6
BcaC02g08006 Brassica carinata HOM05D005207 ORTHO05D010629 4.2e-14 82.8 186 29.6
C04p59510 Brassica napus HOM05D005207 ORTHO05D010629 4.2e-14 82.8 186 29.6
BolC4t27455H Brassica oleracea HOM05D005207 ORTHO05D010629 4.2e-14 82.8 186 29.6
BcaC02g08008 Brassica carinata HOM05D005207 ORTHO05D010629 7.2e-14 82.0 186 29.6
A09p66540 Brassica napus HOM05D005207 ORTHO05D024328 7.2e-14 82.0 208 30.8
BraA09t41992Z Brassica rapa HOM05D005207 ORTHO05D024328 7.2e-14 82.0 208 30.8
AL1G48230 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 9.5e-14 81.6 173 32.4
AT5G03480 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 9.5e-14 81.6 213 28.6
BcaNung01579 Brassica carinata HOM05D005207 ORTHO05D010629 1.2e-13 81.3 241 28.6
A04p23300 Brassica napus HOM05D005207 ORTHO05D010629 1.2e-13 81.3 186 30.6
A10p29730 Brassica napus HOM05D005207 ORTHO05D011102 1.2e-13 81.3 194 30.9
BraA10t45015Z Brassica rapa HOM05D005207 ORTHO05D011102 1.2e-13 81.3 194 30.9
BcaC02g07482 Brassica carinata HOM05D005207 ORTHO05D010629 2.8e-13 80.1 201 29.9
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 8.0e-13 78.6 191 32.5
BcaC01g05826 Brassica carinata HOM05D005207 ORTHO05D010629 8.0e-13 78.6 135 32.6
BcaB01g05240 Brassica carinata HOM05D002922 ORTHO05D024472 3.0e-12 76.6 176 27.8
C03p09150 Brassica napus HOM05D002922 ORTHO05D024472 3.0e-12 76.6 176 27.8
C04p59490 Brassica napus HOM05D005207 ORTHO05D010629 3.0e-12 76.6 186 29.0
BolC3t13412H Brassica oleracea HOM05D002922 ORTHO05D024472 3.0e-12 76.6 176 27.8
BcaC08g47263 Brassica carinata HOM05D005207 ORTHO05D010629 5.2e-12 75.9 111 30.6
C04p68620 Brassica napus HOM05D005207 ORTHO05D010629 6.8e-12 75.5 131 32.8
BolC4t28368H Brassica oleracea HOM05D005207 ORTHO05D010629 6.8e-12 75.5 131 32.8
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 1.5e-11 74.3 172 30.8
BraA03t10119Z Brassica rapa HOM05D002922 ORTHO05D024472 1.5e-11 74.3 176 27.3
BcaC02g08027 Brassica carinata HOM05D005207 ORTHO05D010629 2.0e-11 73.9 137 30.7
BcaB06g28876 Brassica carinata HOM05D005207 ORTHO05D010629 4.4e-11 72.8 192 27.1
Thhalv10014517m.g Eutrema salsugineum HOM05D005207 ORTHO05D011436 4.4e-11 72.8 186 29.0
AL4G36910 Arabidopsis lyrata HOM05D008530 ORTHO05D011436 2.2e-10 70.5 201 28.4
AL6G15310 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 2.8e-10 70.1 150 30.0
AL3G38420 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.7e-10 69.7 87 39.1
AL6G12880 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 8.3e-10 68.6 87 39.1
C09p70090 Brassica napus HOM05D005207 ORTHO05D011102 8.3e-10 68.6 185 27.6
BolC9t59752H Brassica oleracea HOM05D005207 ORTHO05D011102 8.3e-10 68.6 185 27.6
Thhalv10021355m.g Eutrema salsugineum HOM05D005207 ORTHO05D021650 8.3e-10 68.6 183 30.1
AL6G14810 Arabidopsis lyrata HOM05D001907 ORTHO05D011102 2.4e-09 67.0 94 39.4
AL6G14750 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 5.4e-09 65.9 94 39.4
Carub.0007s1576 Capsella rubella HOM05D005207 ORTHO05D010629 7.0e-09 65.5 90 41.1
BcaB06g28704 Brassica carinata HOM05D005207 ORTHO05D010629 9.2e-09 65.1 123 30.9
A09p63000 Brassica napus HOM05D008530 ORTHO05D011436 1.2e-08 64.7 204 27.5
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 2.7e-08 63.5 85 37.6
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 5.9e-08 62.4 74 41.9
BraA09t42032Z Brassica rapa HOM05D002922 ORTHO05D017209 5.9e-08 62.4 99 29.3
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 5.9e-08 62.4 74 39.2
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 7.8e-08 62.0 74 40.5
AT5G03495 Arabidopsis thaliana HOM05D005207 ORTHO05D012773 1.3e-07 61.2 77 36.4
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 1.7e-07 60.8 74 40.5
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.7e-07 60.8 73 39.7
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 2.3e-07 60.5 83 33.7
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 2.9e-07 60.1 74 36.5
AL6G12910 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 3.9e-07 59.7 87 34.5
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 3.9e-07 59.7 71 38.0
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 3.9e-07 59.7 71 38.0
Carub.0006s0230 Capsella rubella HOM05D005207 ORTHO05D012773 3.9e-07 59.7 74 37.8
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 5.0e-07 59.3 73 38.4
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 5.0e-07 59.3 83 33.7
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 5.0e-07 59.3 73 38.4
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 5.0e-07 59.3 83 33.7
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 5.0e-07 59.3 73 38.4
BcaC05g26764 Brassica carinata HOM05D005207 ORTHO05D021650 6.6e-07 58.9 102 33.3
BraA10t45014Z Brassica rapa HOM05D005207 ORTHO05D011102 6.6e-07 58.9 185 25.4
BcaC06g32380 Brassica carinata HOM05D005207 ORTHO05D011102 8.6e-07 58.5 74 36.5
C09p70110 Brassica napus HOM05D005207 ORTHO05D011102 8.6e-07 58.5 74 36.5
BolC8t52195H Brassica oleracea HOM05D008530 ORTHO05D032716 8.6e-07 58.5 145 29.0
BolC9t59754H Brassica oleracea HOM05D005207 ORTHO05D011102 8.6e-07 58.5 74 36.5
Carub.0008s1399 Capsella rubella HOM05D005207 ORTHO05D012773 8.6e-07 58.5 173 30.1
BcaNung06579 Brassica carinata HOM05D005207 ORTHO05D011102 1.1e-06 58.2 133 30.1
C03p03220 Brassica napus HOM05D005207 ORTHO05D011102 1.1e-06 58.2 133 30.1
BcaC05g26761 Brassica carinata HOM05D005207 ORTHO05D021650 1.5e-06 57.8 91 35.2
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-06 57.8 84 33.3
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 1.5e-06 57.8 84 33.3
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 1.5e-06 57.8 84 33.3
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 1.5e-06 57.8 71 35.2
AL6G12860 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 1.9e-06 57.4 105 33.3
BcaC06g32555 Brassica carinata HOM05D005207 ORTHO05D011102 1.9e-06 57.4 83 30.1
BcaC07g41650 Brassica carinata HOM05D008530 ORTHO05D011436 1.9e-06 57.4 188 27.1
C08p46510 Brassica napus HOM05D008530 ORTHO05D011436 1.9e-06 57.4 188 27.1
BraA09t41662Z Brassica rapa HOM05D008530 ORTHO05D011436 1.9e-06 57.4 177 27.7
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.5e-06 57.0 73 38.4
AL639U10010 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 2.5e-06 57.0 83 37.3
AL6G12890 Arabidopsis lyrata HOM05D005207 ORTHO05D012773 2.5e-06 57.0 77 35.1
AL7G15440 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 2.5e-06 57.0 83 37.3
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 2.5e-06 57.0 69 36.2
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 2.5e-06 57.0 75 37.3
BcaB06g25912 Brassica carinata HOM05D002658 ORTHO05D003000 2.5e-06 57.0 75 36.0
BcaC07g41646 Brassica carinata HOM05D008530 ORTHO05D011436 2.5e-06 57.0 186 26.9
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 2.5e-06 57.0 85 37.6
C08p46470 Brassica napus HOM05D008530 ORTHO05D011436 2.5e-06 57.0 186 26.9
BolC8t52203H Brassica oleracea HOM05D008530 ORTHO05D011436 2.5e-06 57.0 71 40.8
A03p02800 Brassica napus HOM05D005207 ORTHO05D011102 3.3e-06 56.6 79 35.4
BolC8t52194H Brassica oleracea HOM05D008530 ORTHO05D011436 3.3e-06 56.6 186 26.9
BraA03t09643Z Brassica rapa HOM05D005207 ORTHO05D011102 3.3e-06 56.6 79 35.4
Carub.0007s0460 Capsella rubella HOM05D005207 ORTHO05D010629 3.3e-06 56.6 89 36.0
AL7G29920 Arabidopsis lyrata HOM05D005207 ORTHO05D010629 4.3e-06 56.2 69 46.4
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 4.3e-06 56.2 83 33.7
A09p24010 Brassica napus HOM05D002922 ORTHO05D021868 4.3e-06 56.2 81 30.9
A09p63050 Brassica napus HOM05D008530 ORTHO05D011436 4.3e-06 56.2 179 27.9
BraA09t38003Z Brassica rapa HOM05D002922 ORTHO05D021868 4.3e-06 56.2 81 30.9
BraA09t41658Z Brassica rapa HOM05D008530 ORTHO05D011436 4.3e-06 56.2 179 27.9
Carub.0006s0326 Capsella rubella HOM05D005207 ORTHO05D012773 4.3e-06 56.2 74 36.5
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 5.6e-06 55.8 84 38.1
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 7.3e-06 55.5 74 35.1
BcaC05g26763 Brassica carinata HOM05D005207 ORTHO05D021650 7.3e-06 55.5 111 30.6
BcaC07g41644 Brassica carinata HOM05D008530 ORTHO05D011436 7.3e-06 55.5 186 26.3
C05p46990 Brassica napus HOM05D002658 ORTHO05D003000 7.3e-06 55.5 85 37.6
BolC5t33428H Brassica oleracea HOM05D002658 ORTHO05D003000 7.3e-06 55.5 85 37.6
CARHR093990 Cardamine hirsuta HOM05D002658 ORTHO05D003000 7.3e-06 55.5 76 40.8
BcaC05g28595 Brassica carinata HOM05D002658 ORTHO05D003000 9.5e-06 55.1 85 37.6
C08p46590 Brassica napus HOM05D008530 ORTHO05D011436 9.5e-06 55.1 80 37.5
CARHR061650 Cardamine hirsuta HOM05D005207 ORTHO05D010629 9.5e-06 55.1 73 34.2


User provided reference genes

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