Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04202 Brassica carinata HOM05D009716 ORTHO05D008318 2.1e-143 512.3 254 100.0
BcaB06g25990 Brassica carinata HOM05D009716 ORTHO05D008318 7.3e-51 204.9 106 96.2
BcaB03g15150 Brassica carinata HOM05D009716 ORTHO05D008318 1.7e-47 193.7 100 98.0
BcaB06g28407 Brassica carinata HOM05D009716 ORTHO05D008318 1.1e-46 191.0 100 97.0
BcaB04g18273 Brassica carinata HOM05D009716 ORTHO05D008318 2.0e-40 170.2 87 97.7
BcaB04g17306 Brassica carinata HOM05D009716 ORTHO05D008318 9.8e-40 167.9 87 96.6
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 3.5e-37 159.5 143 57.3
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 8.6e-36 154.8 148 55.4
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 1.5e-35 154.1 143 56.6
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 1.9e-35 153.7 144 56.2
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 1.9e-35 153.7 152 54.6
BcaB06g27193 Brassica carinata HOM05D009716 ORTHO05D008318 3.3e-35 152.9 87 92.0
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 9.5e-35 151.4 143 55.2
Carub.0004s2588 Capsella rubella HOM05D002300 ORTHO05D002340 1.1e-33 147.9 143 53.8
Aa31LG1G25160 Aethionema arabicum HOM05D002300 ORTHO05D002340 4.0e-33 146.0 143 51.0
CARHR169920 Cardamine hirsuta HOM05D002300 ORTHO05D002340 2.0e-32 143.7 148 50.7
CARHR138490 Cardamine hirsuta HOM05D002300 ORTHO05D002340 4.4e-32 142.5 142 51.4
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 2.9e-31 139.8 145 51.0
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 3.2e-30 136.3 145 51.0
Carub.0005s2627 Capsella rubella HOM05D002300 ORTHO05D002340 3.2e-30 136.3 143 49.7
THA.LOC104803786 Tarenaya hassleriana HOM05D002300 ORTHO05D002340 4.1e-30 136.0 144 49.3
Aa31LG10G13870 Aethionema arabicum HOM05D002300 ORTHO05D002340 1.7e-28 130.6 140 50.0
AL5G41460 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 1.1e-27 127.9 143 46.9
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 1.1e-27 127.9 139 46.8
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 1.1e-27 127.9 139 46.8
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 1.1e-27 127.9 139 46.8
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 1.1e-27 127.9 139 46.8
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 2.5e-27 126.7 140 46.4
Sp5g03620 Schrenkiella parvula HOM05D002300 ORTHO05D002340 2.1e-26 123.6 143 45.5
BcaB04g18244 Brassica carinata HOM05D009716 ORTHO05D008318 3.6e-26 122.9 64 95.3
Actinidia26503 Actinidia chinensis HOM05D002300 ORTHO05D002340 1.8e-25 120.6 139 46.8
Prupe.1G197900 Prunus persica HOM05D002300 ORTHO05D002340 3.4e-24 116.3 151 43.7
BcaB02g11003 Brassica carinata HOM05D009716 ORTHO05D008318 4.4e-24 115.9 61 96.7
MD04G1045000 Malus domestica HOM05D002300 ORTHO05D002340 7.6e-24 115.2 150 43.3
MD13G1271200 Malus domestica HOM05D002300 ORTHO05D002340 3.8e-23 112.8 150 42.7
Gohir.A02G011500 Gossypium hirsutum HOM05D002300 ORTHO05D002340 4.9e-23 112.5 153 41.2
Gorai.005G015700 Gossypium raimondii HOM05D002300 ORTHO05D002340 4.9e-23 112.5 153 41.2
Gohir.D02G012300 Gossypium hirsutum HOM05D002300 ORTHO05D002340 1.4e-22 110.9 153 40.5
BolC8t48618H Brassica oleracea HOM05D009716 ORTHO05D008318 2.4e-22 110.2 83 63.9
CANSAT78G0002 Cannabis sativa HOM05D002300 ORTHO05D002340 2.4e-22 110.2 154 40.3
Duzib151G0795 Durio zibethinus HOM05D002300 ORTHO05D002340 5.4e-22 109.0 154 40.3
Duzib268G0577 Durio zibethinus HOM05D002300 ORTHO05D002340 7.1e-22 108.6 155 40.0
Rhsim02G0082400 Rhododendron simsii HOM05D002300 ORTHO05D002340 7.1e-22 108.6 172 39.0
Thecc.04G175200 Theobroma cacao HOM05D002300 ORTHO05D002340 7.1e-22 108.6 154 40.3
Haze_01461 Corylus avellana HOM05D002300 ORTHO05D002340 1.2e-21 107.8 164 39.6
Dinv05078 Davidia involucrata HOM05D002300 ORTHO05D002340 1.2e-21 107.8 172 39.5
Cfa015194 Carpinus fangiana HOM05D002300 ORTHO05D002340 1.6e-21 107.5 154 39.6
CiPaw.01G096200 Carya illinoinensis HOM05D002300 ORTHO05D002340 1.6e-21 107.5 155 41.3
Glyma.12G051000 Glycine max HOM05D002300 ORTHO05D002340 1.6e-21 107.5 151 39.1
Ca_20799_v3 Cicer arietinum L. HOM05D002300 ORTHO05D002340 2.1e-21 107.1 152 40.1
Glyma.11G126400 Glycine max HOM05D002300 ORTHO05D002340 2.1e-21 107.1 152 38.2
ATR0743G014 Amborella trichopoda HOM05D002300 ORTHO05D002340 2.7e-21 106.7 125 44.8
Manes.04G039300 Manihot esculenta HOM05D002300 ORTHO05D002340 2.7e-21 106.7 145 40.7
BraA01t01960Z Brassica rapa HOM05D009716 ORTHO05D008318 3.5e-21 106.3 82 62.2
MELO3C022443.2 Cucumis melo HOM05D002300 ORTHO05D002340 4.6e-21 105.9 155 41.3
Lalb_Chr01g0003091 Lupinus albus HOM05D002300 ORTHO05D002340 4.6e-21 105.9 152 38.2
ECA248G2483 Erigeron canadensis HOM05D002300 ORTHO05D002340 6.0e-21 105.5 125 44.8
Psat7g209640 Pisum sativum HOM05D002300 ORTHO05D002340 6.0e-21 105.5 152 38.2
BraA03t15217Z Brassica rapa HOM05D009716 ORTHO05D008318 7.8e-21 105.1 83 60.2
BraA04t15920Z Brassica rapa HOM05D009716 ORTHO05D008318 7.8e-21 105.1 83 60.2
TPR.G34226 Trifolium pratense HOM05D002300 ORTHO05D002340 7.8e-21 105.1 152 37.5
Atru.chr4.1262 Acer truncatum HOM05D002300 ORTHO05D002340 1.0e-20 104.8 156 38.5
Potri.017G026600 Populus trichocarpa HOM05D002300 ORTHO05D002340 1.0e-20 104.8 149 40.9
Sabra17G0016300 Salix brachista HOM05D002300 ORTHO05D002340 1.0e-20 104.8 158 41.1
CsaV3_6G006810 Cucumis sativus L. HOM05D002300 ORTHO05D002340 1.3e-20 104.4 156 40.4
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 1.7e-20 104.0 164 37.2
COL.COLO4_10090 Corchorus olitorius HOM05D002300 ORTHO05D002340 1.7e-20 104.0 155 39.4
QL10p050788 Quercus lobata HOM05D002300 ORTHO05D002340 2.3e-20 103.6 155 40.0
ClCG06G000960 Citrullus lanatus HOM05D002300 ORTHO05D002340 3.0e-20 103.2 155 40.6
Dinv44155 Davidia involucrata HOM05D002300 ORTHO05D002340 3.0e-20 103.2 172 40.1
MBI11_g10482_MAGBIO Magnolia biondii HOM05D002300 ORTHO05D002340 3.0e-20 103.2 168 38.1
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 3.9e-20 102.8 152 37.5
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 3.9e-20 102.8 152 37.5
CiPaw.02G052000 Carya illinoinensis HOM05D002300 ORTHO05D002340 3.9e-20 102.8 155 38.7
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 3.9e-20 102.8 152 37.5
Gohir.A10G140500 Gossypium hirsutum HOM05D002300 ORTHO05D002340 5.1e-20 102.4 154 38.3
Gohir.D10G126300 Gossypium hirsutum HOM05D002300 ORTHO05D002340 5.1e-20 102.4 154 38.3
Gorai.011G139200 Gossypium raimondii HOM05D002300 ORTHO05D002340 5.1e-20 102.4 154 38.3
Eucgr.A00103 Eucalyptus grandis HOM05D002300 ORTHO05D002340 6.6e-20 102.1 155 38.1
Actinidia11294 Actinidia chinensis HOM05D002300 ORTHO05D002340 8.7e-20 101.7 131 42.0
Lj3g0017734 Lotus japonicus HOM05D002300 ORTHO05D002340 1.1e-19 101.3 150 38.0
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 1.5e-19 100.9 152 39.5
Sed0027019 Sechium edule HOM05D002300 ORTHO05D002340 1.9e-19 100.5 156 39.1
DCAR_022900 Daucus carota HOM05D002300 ORTHO05D002340 2.5e-19 100.1 169 34.9
Phvul.011G053300 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 2.5e-19 100.1 152 37.5
VMungo1080G1168 Vigna mungo HOM05D002300 ORTHO05D002340 2.5e-19 100.1 135 40.7
BcaC05g27285 Brassica carinata HOM05D009716 ORTHO05D008318 5.6e-19 99.0 73 67.1
Sed0001804 Sechium edule HOM05D002300 ORTHO05D002340 5.6e-19 99.0 157 38.9
CSS0012722 Camellia sinensis var. sinensis HOM05D002300 ORTHO05D002340 9.6e-19 98.2 172 36.0
Phvul.005G154000 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 9.6e-19 98.2 135 38.5
Potri.007G131100 Populus trichocarpa HOM05D002300 ORTHO05D002340 9.6e-19 98.2 149 37.6
Lsat_1_v5_gn_2_38600 Lactuca sativa HOM05D002300 ORTHO05D002340 1.3e-18 97.8 173 38.2
ECA238G4764 Erigeron canadensis HOM05D002300 ORTHO05D002340 1.6e-18 97.4 170 38.8
Nn1g09701 Nelumbo nucifera HOM05D002300 ORTHO05D002340 1.6e-18 97.4 163 36.8
PGR083G0540 Punica granatum HOM05D002300 ORTHO05D002340 1.6e-18 97.4 154 35.7
MSTRG.9753 Avicennia marina HOM05D002300 ORTHO05D002340 2.1e-18 97.1 166 35.5
BcaC09g48842 Brassica carinata HOM05D009716 ORTHO05D008318 2.1e-18 97.1 73 65.8
Glyma.13G345300 Glycine max HOM05D002300 ORTHO05D002340 2.1e-18 97.1 137 38.7
Glyma.15G029000 Glycine max HOM05D002300 ORTHO05D002340 2.1e-18 97.1 124 41.9
RcHm_v2.0_Chr1g0330861 Rosa chinensis HOM05D002300 ORTHO05D002340 2.1e-18 97.1 156 39.1
HanXRQChr11g0327451 Helianthus annuus HOM05D002300 ORTHO05D002340 2.8e-18 96.7 164 37.2
HanXRQChr17g0570721 Helianthus annuus HOM05D002300 ORTHO05D002340 2.8e-18 96.7 124 43.5
SGA_v2.0_scaffold12G06172 Striga asiatica HOM05D002300 ORTHO05D002340 2.8e-18 96.7 169 35.5
Ciclev10018733m.g Citrus clementina HOM05D002300 ORTHO05D002340 8.1e-18 95.1 156 35.9
BolC7t43125H Brassica oleracea HOM05D009716 ORTHO05D008318 1.1e-17 94.7 73 65.8
PSO017G2971 Papaver somniferum HOM05D002300 ORTHO05D002340 1.1e-17 94.7 162 37.0
FvH4_7g04880 Fragaria vesca HOM05D002300 ORTHO05D002340 1.4e-17 94.4 156 37.2
FAN06G4459 Fragaria x ananassa HOM05D002300 ORTHO05D002340 1.4e-17 94.4 156 37.2
FAN10G2998 Fragaria x ananassa HOM05D002300 ORTHO05D002340 1.4e-17 94.4 156 37.2
PSO675G3071 Papaver somniferum HOM05D002300 ORTHO05D002340 1.4e-17 94.4 162 37.0
Oeu034445.2 Olea europaea HOM05D002300 ORTHO05D002340 1.8e-17 94.0 165 35.2
Rhsim09G0022500 Rhododendron simsii HOM05D002300 ORTHO05D002340 1.8e-17 94.0 168 35.1
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 3.1e-17 93.2 165 35.2
TAR362G0143 Trochodendron aralioides HOM05D002300 ORTHO05D002340 3.1e-17 93.2 173 33.5
Oeu064767.2 Olea europaea HOM05D002300 ORTHO05D002340 9.0e-17 91.7 169 34.3
Solyc06g053320.4 Solanum lycopersicum HOM05D002300 ORTHO05D002340 1.2e-16 91.3 171 33.3
Sopen06g018380 Solanum pennellii HOM05D002300 ORTHO05D002340 1.2e-16 91.3 171 33.3
Aqoxy2G04157 Aquilegia oxysepala HOM05D002300 ORTHO05D002340 1.5e-16 90.9 172 33.7
Nn7g37589 Nelumbo nucifera HOM05D002300 ORTHO05D002340 1.5e-16 90.9 172 33.7
CAN.G540.6 Capsicum annuum HOM05D002300 ORTHO05D002340 2.6e-16 90.1 169 34.9
Migut.G01324 Erythranthe guttata HOM05D002300 ORTHO05D002340 3.4e-16 89.7 169 33.7
Peaxi162Scf00184g00210 Petunia axillaris HOM05D002300 ORTHO05D002340 9.9e-16 88.2 164 32.3
Cpa.g.sc9.316 Carica papaya HOM05D002300 ORTHO05D002340 1.3e-15 87.8 155 34.2
BcaC02g08813 Brassica carinata HOM05D009716 ORTHO05D008318 1.7e-15 87.4 73 61.6
Lj3A34T42 Lonicera japonica HOM05D002300 ORTHO05D002340 3.8e-15 86.3 169 34.9
GSVIVG01010842001 Vitis vinifera HOM05D002300 ORTHO05D002340 4.9e-15 85.9 171 32.2
BolC7t42532H Brassica oleracea HOM05D009716 ORTHO05D008318 6.4e-15 85.5 67 65.7
Lj6A86G18 Lonicera japonica HOM05D002300 ORTHO05D002340 6.4e-15 85.5 151 36.4
Sc19g0002840 Simmondsia chinensis HOM05D002300 ORTHO05D002340 8.4e-15 85.1 126 38.1
unitig_0.g2401 Utricularia gibba HOM05D002300 ORTHO05D002340 1.1e-14 84.7 123 40.7
Lj6A104G19 Lonicera japonica HOM05D002300 ORTHO05D002340 1.4e-14 84.3 150 36.0
Hund03175 Selenicereus undatus HOM05D002300 ORTHO05D002340 1.9e-14 84.0 168 33.3
FAN03G0795 Fragaria x ananassa HOM05D002300 ORTHO05D002340 2.4e-14 83.6 184 31.5
Peaxi162Scf00180g00215 Petunia axillaris HOM05D002300 ORTHO05D002340 7.1e-14 82.0 170 32.9
unitig_52.g17684 Utricularia gibba HOM05D002300 ORTHO05D002340 2.7e-13 80.1 125 37.6
BcaB05g23583 Brassica carinata HOM05D027275 ORTHO05D095516 6.0e-13 79.0 43 90.7
Ah.07g202360 Amaranthus hybridus HOM05D002300 ORTHO05D002340 1.0e-12 78.2 167 30.5
HPP92_005581 Vanilla planifolia HOM05D002300 ORTHO05D002340 1.0e-12 78.2 165 31.5
HPP92_005593 Vanilla planifolia HOM05D002300 ORTHO05D002340 1.0e-12 78.2 165 31.5
Os09g0516300 Oryza sativa ssp. japonica HOM05D002300 ORTHO05D002340 3.0e-12 76.6 153 28.8
HPP92_007602 Vanilla planifolia HOM05D002300 ORTHO05D002340 3.9e-12 76.3 153 30.1
BcaB02g09873 Brassica carinata HOM05D027275 ORTHO05D095191 8.7e-12 75.1 42 88.1
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 1.5e-11 74.3 178 28.7
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 3.3e-11 73.2 169 27.8
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 4.3e-11 72.8 168 31.0
Zm00001eb318720 Zea mays HOM05D002300 ORTHO05D002340 1.3e-10 71.2 149 30.9
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 1.6e-10 70.9 168 30.4
BcaB01g00083 Brassica carinata HOM05D009716 ORTHO05D008318 2.8e-10 70.1 68 52.9
EL10Ac3g06011 Beta vulgaris HOM05D002300 ORTHO05D002340 3.6e-10 69.7 189 28.0
CBR_g19751 Chara braunii HOM05D002300 ORTHO05D002340 1.4e-09 67.8 148 27.7
Actinidia34582 Actinidia chinensis HOM05D002300 ORTHO05D002340 5.3e-09 65.9 152 30.3
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 2.6e-08 63.5 85 38.8
SHI29127 Sapria himalayana HOM05D002300 ORTHO05D002340 5.8e-08 62.4 82 40.2
FAN01G0141 Fragaria x ananassa HOM05D002300 ORTHO05D002340 1.3e-07 61.2 82 42.7
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.7e-07 60.8 152 26.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.8e-07 59.7 81 43.2
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 4.9e-07 59.3 150 28.0
BcaB02g07732 Brassica carinata HOM05D007759 ORTHO05D008318 1.1e-06 58.2 83 37.3
Lalb_Chr24g0396761 Lupinus albus HOM05D002300 ORTHO05D002340 3.2e-06 56.6 33 69.7
BolC8t46859H Brassica oleracea HOM05D009716 ORTHO05D008318 7.1e-06 55.5 47 61.7
Migut.N03099 Erythranthe guttata HOM05D002300 ORTHO05D002340 7.1e-06 55.5 68 41.2


User provided reference genes

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