Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04187 Brassica carinata HOM05D005376 ORTHO05D006481 2.0e-59 232.3 121 100.0
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 3.3e-33 145.2 125 71.2
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 3.3e-33 145.2 133 65.4
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 4.7e-32 141.4 125 72.0
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 4.7e-32 141.4 125 71.2
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.4e-31 139.8 125 72.0
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.4e-31 139.8 125 72.0
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 2.3e-31 139.0 121 71.9
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 3.7e-29 131.7 135 62.2
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 6.4e-29 131.0 139 60.4
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 2.4e-28 129.0 136 61.0
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 1.6e-24 116.3 115 61.7
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 4.7e-24 114.8 137 58.4
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 1.4e-23 113.2 128 61.7
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 1.4e-23 113.2 129 62.0
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 4.0e-23 111.7 131 60.3
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 6.8e-23 110.9 130 60.8
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 8.9e-23 110.5 121 62.0
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 4.9e-21 104.8 149 49.7
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 1.9e-20 102.8 126 56.3
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.2e-19 100.1 131 55.7
A05p39690 Brassica napus HOM05D000449 ORTHO05D000360 1.6e-16 89.7 67 79.1
BraA05t22753Z Brassica rapa HOM05D010985 ORTHO05D014949 1.6e-16 89.7 67 79.1
A07p13870 Brassica napus HOM05D010985 ORTHO05D014949 2.1e-16 89.4 67 80.6
A08p13030 Brassica napus HOM05D010985 ORTHO05D014949 3.6e-16 88.6 65 81.5
A10p31810 Brassica napus HOM05D010985 ORTHO05D006481 6.8e-15 84.3 61 78.7
BcaC05g27435 Brassica carinata HOM05D010985 ORTHO05D006481 2.6e-14 82.4 59 81.4
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 2.6e-14 82.4 131 46.6
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 7.5e-14 80.9 128 46.9
C05p33870 Brassica napus HOM05D010985 ORTHO05D014949 7.5e-14 80.9 59 81.4
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 9.8e-14 80.5 126 45.2
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 9.8e-14 80.5 131 44.3
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 2.9e-13 79.0 123 41.5
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.9e-13 79.0 130 43.8
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 6.4e-13 77.8 131 44.3
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.4e-13 77.8 131 44.3
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 6.4e-13 77.8 131 44.3
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-12 77.0 131 44.3
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.1e-12 77.0 131 44.3
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 1.9e-12 76.3 90 51.1
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.9e-12 76.3 130 43.8
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 4.1e-12 75.1 119 42.0
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 4.1e-12 75.1 128 42.2
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 5.4e-12 74.7 120 43.3
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 5.4e-12 74.7 127 44.9
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 7.1e-12 74.3 112 47.3
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 9.2e-12 73.9 125 42.4
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.2e-11 73.6 131 43.5
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.6e-11 73.2 136 39.7
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.1e-11 72.8 133 42.9
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.7e-11 72.4 129 41.1
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.5e-11 72.0 131 42.0
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 3.5e-11 72.0 136 41.9
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 4.6e-11 71.6 109 44.0
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 7.8e-11 70.9 107 44.9
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 7.8e-11 70.9 123 39.8
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 1.0e-10 70.5 109 45.0
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.0e-10 70.5 133 42.9
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.3e-10 70.1 111 45.9
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 1.3e-10 70.1 130 41.5
A03p15660 Brassica napus HOM05D027345 ORTHO05D028164 2.3e-10 69.3 46 84.8
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 2.3e-10 69.3 126 38.9
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 3.0e-10 68.9 111 45.0
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 3.0e-10 68.9 134 39.6
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 3.9e-10 68.6 104 48.1
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 5.1e-10 68.2 115 44.3
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 5.1e-10 68.2 111 43.2
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 5.1e-10 68.2 136 41.2
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 6.6e-10 67.8 108 43.5
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 8.6e-10 67.4 78 46.2
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 1.1e-09 67.0 120 41.7
BraA03t12563Z Brassica rapa HOM05D010985 ORTHO05D014949 1.1e-09 67.0 39 92.3
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.1e-09 67.0 125 40.0
BcaC04g21175 Brassica carinata HOM05D010985 ORTHO05D014949 1.5e-09 66.6 52 78.8
C09p34530 Brassica napus HOM05D010985 ORTHO05D014949 1.5e-09 66.6 52 78.8
BolC9t56297H Brassica oleracea HOM05D010985 ORTHO05D014949 1.5e-09 66.6 52 78.8
Hma1.2p1_0044F.1_g025970 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 1.5e-09 66.6 108 44.4
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 1.5e-09 66.6 77 48.1
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 1.9e-09 66.2 137 39.4
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 2.5e-09 65.9 104 44.2
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 2.5e-09 65.9 126 38.9
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 2.5e-09 65.9 127 39.4
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.5e-09 65.9 138 39.1
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.5e-09 65.9 138 39.1
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.5e-09 65.9 103 40.8
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 3.3e-09 65.5 93 46.2
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 5.6e-09 64.7 131 41.2
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 1.2e-08 63.5 91 47.3
BcaB02g10956 Brassica carinata HOM05D005376 ORTHO05D006481 2.1e-08 62.8 79 53.2
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 2.8e-08 62.4 136 36.0
BraA03t10858Z Brassica rapa HOM05D027345 ORTHO05D028164 3.6e-08 62.0 54 64.8
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 8.1e-08 60.8 117 42.7
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 2.3e-07 59.3 168 34.5
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 6.8e-07 57.8 98 36.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 1.5e-06 56.6 117 35.0
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.5e-06 56.6 139 36.7
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 2.0e-06 56.2 73 45.2
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 2.6e-06 55.8 166 31.3
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 3.4e-06 55.5 118 34.7
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 4.4e-06 55.1 115 36.5
Lalb_Chr02g0141171 Lupinus albus HOM05D005376 ORTHO05D006481 4.4e-06 55.1 57 50.9
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 5.8e-06 54.7 112 41.1
Hma1.2p1_0299F.1_g117880 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 7.6e-06 54.3 85 40.0
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 9.9e-06 53.9 106 38.7
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 9.9e-06 53.9 115 34.8


User provided reference genes

Program Settings