Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 7.4e-172 607.4 388 100.0
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.2e-139 499.6 393 80.2
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 5.4e-138 495.0 392 76.8
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 5.4e-138 495.0 392 76.8
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 5.4e-138 495.0 392 76.8
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 5.9e-137 491.5 394 75.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-135 486.9 396 75.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.5e-135 486.9 396 75.3
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 7.0e-130 468.0 397 73.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 7.0e-130 468.0 397 73.6
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.5e-124 448.0 420 67.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.3e-119 432.6 408 72.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 9.2e-114 414.5 399 70.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.9e-107 392.1 411 62.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 9.9e-100 367.9 387 70.0
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.8e-88 330.5 414 57.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 3.9e-88 329.3 409 58.2
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.4e-87 325.1 404 60.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 2.1e-86 323.6 415 62.2
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.4e-83 311.6 396 54.8
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.1e-79 301.2 401 55.6
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-77 294.7 400 57.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-77 294.7 400 57.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-76 291.2 401 57.4
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.5e-76 289.3 213 77.0
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 7.6e-76 288.5 398 57.3
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.5e-74 282.3 410 57.3
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 7.1e-74 282.0 410 50.2
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 3.3e-71 273.1 415 49.4
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.2e-67 260.4 395 53.9
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.2e-65 254.6 409 51.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.8e-56 224.2 391 47.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.0e-55 220.7 401 47.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 7.4e-55 218.8 390 46.7
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-52 211.1 389 44.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.5e-52 211.1 389 44.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 4.5e-52 209.5 384 43.8
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.9e-51 206.8 385 47.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.0e-51 206.1 387 43.2
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-50 204.9 384 47.9
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.5e-50 204.5 420 44.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.2e-50 203.4 381 43.3
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 4.2e-50 203.0 399 47.4
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 9.4e-50 201.8 399 44.6
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 8.0e-49 198.7 396 44.9
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.0e-48 198.4 385 43.1
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.3e-48 197.2 373 43.4
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.0e-48 196.8 393 41.2
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 6.7e-48 195.7 391 45.3
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 8.8e-48 195.3 377 42.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 8.8e-48 195.3 403 42.2
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.5e-47 194.5 384 40.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 3.3e-47 193.4 408 43.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.4e-47 193.0 385 41.8
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 7.4e-47 192.2 386 42.2
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.7e-46 189.9 412 45.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 3.7e-46 189.9 389 39.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.7e-46 189.9 382 44.0
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 8.2e-46 188.7 397 46.6
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.4e-45 188.0 387 43.2
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.8e-45 187.6 382 40.1
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 4.1e-45 186.4 381 40.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.3e-45 186.0 391 41.9
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.2e-44 184.9 337 43.3
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.6e-44 184.5 407 44.7
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.0e-44 184.1 396 46.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.3e-43 181.4 415 41.2
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.3e-43 181.4 389 42.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.7e-43 181.0 382 39.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-43 181.0 384 47.9
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 3.8e-43 179.9 392 41.3
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.8e-43 179.9 388 42.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 8.5e-43 178.7 401 44.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.1e-42 178.3 345 42.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.5e-42 177.2 395 41.8
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.5e-42 177.2 381 40.2
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 4.2e-42 176.4 381 40.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 7.2e-42 175.6 332 41.6
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 7.2e-42 175.6 378 39.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.2e-41 174.9 413 41.4
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.2e-41 174.9 379 41.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.6e-41 174.5 393 40.7
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.6e-41 174.5 393 40.5
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.6e-41 174.5 347 41.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 4.7e-41 172.9 402 44.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.0e-40 171.8 385 43.4
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.4e-40 171.4 384 45.3
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.0e-40 169.9 396 39.4
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 4.0e-40 169.9 343 40.2
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.2e-39 168.3 385 39.7
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.2e-39 168.3 394 38.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.5e-39 167.9 341 46.0
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.6e-39 167.2 408 40.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.6e-39 167.2 354 40.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.7e-38 164.5 391 38.4
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.2e-38 164.1 399 37.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.7e-38 163.3 411 39.2
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.8e-38 162.9 342 39.8
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 6.3e-38 162.5 389 38.6
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.4e-37 161.4 384 38.3
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.1e-37 159.8 392 37.8
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.2e-36 158.3 396 40.4
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.0e-36 157.5 394 38.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.7e-36 157.1 392 38.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.5e-36 156.8 343 40.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 3.5e-36 156.8 374 41.4
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 7.7e-36 155.6 396 40.2
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.7e-35 154.5 247 48.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.8e-35 153.3 392 38.3
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.1e-34 151.8 406 35.7
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.5e-34 151.4 337 39.5
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.9e-34 151.0 406 40.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.6e-33 147.9 400 41.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.3e-32 144.1 331 36.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 3.0e-32 143.7 200 51.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.2e-31 141.7 335 36.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-31 141.7 451 34.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.2e-31 141.7 386 36.3
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.0e-31 141.0 217 48.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.6e-31 140.6 384 32.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 5.7e-31 139.4 399 38.3
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.7e-30 137.9 187 53.5
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 8.3e-30 135.6 349 36.4
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.1e-29 135.2 180 53.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 2.7e-28 130.6 392 36.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 4.2e-26 123.2 339 40.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 3.6e-25 120.2 348 39.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.0e-24 117.1 389 36.8
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 4.9e-22 109.8 357 31.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 6.3e-22 109.4 416 28.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.4e-21 108.2 294 38.8
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.9e-19 100.1 337 35.0
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 5.6e-18 96.3 381 32.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.6e-17 93.6 274 37.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 8.0e-17 92.4 383 32.4
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 5.2e-16 89.7 274 36.9
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.2e-14 84.3 252 33.7
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 5.4e-13 79.7 108 49.1
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 4.3e-10 70.1 319 36.7
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.1e-08 63.9 225 32.9
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.2e-07 62.0 173 40.5


User provided reference genes

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