Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 0.0e+00 1169.8 588 100.0
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 0.0e+00 1123.2 588 95.6
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 0.0e+00 1120.9 588 95.4
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 0.0e+00 1117.1 588 95.7
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 0.0e+00 1115.5 588 95.1
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 0.0e+00 1113.2 588 95.1
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 0.0e+00 1096.6 588 93.2
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 0.0e+00 1090.5 588 92.3
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 0.0e+00 1085.1 588 92.2
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 3.6e-311 1070.8 588 91.2
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 6.8e-302 1040.0 588 87.9
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 5.0e-297 1023.8 540 93.5
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 3.2e-275 951.4 588 81.1
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.2e-244 849.0 589 71.0
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.2e-244 849.0 589 71.1
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 4.9e-244 847.8 589 71.0
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 2.5e-243 845.5 588 71.3
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 3.2e-243 845.1 588 70.4
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 1.6e-242 842.8 553 73.2
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 2.7e-242 842.0 588 69.9
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 7.9e-242 840.5 586 69.6
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 5.1e-241 837.8 586 70.1
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.1e-240 836.6 591 69.7
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 5.7e-240 834.3 553 72.5
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 5.7e-240 834.3 590 69.3
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 1.3e-239 833.2 586 69.3
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.6e-239 832.8 588 69.7
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 3.7e-239 831.6 538 74.7
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 6.3e-239 830.9 588 69.0
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 6.3e-239 830.9 588 69.0
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 8.2e-239 830.5 587 69.8
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 8.2e-239 830.5 617 66.8
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 2.4e-238 828.9 554 72.4
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 3.1e-238 828.6 588 68.7
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 5.3e-238 827.8 588 68.7
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 6.9e-238 827.4 593 68.3
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 9.0e-238 827.0 586 70.8
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.4e-237 825.1 602 67.8
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 3.4e-237 825.1 588 68.5
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.0e-236 821.2 595 68.2
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 6.5e-236 820.8 588 69.2
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 1.2e-234 816.6 551 71.0
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.2e-234 816.6 553 70.3
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 1.6e-234 816.2 593 68.3
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.1e-234 815.8 595 68.2
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 1.0e-233 813.5 589 67.7
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.8e-233 812.8 588 68.7
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.0e-233 812.0 612 66.8
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 8.8e-233 810.4 667 61.9
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.1e-232 810.1 566 69.6
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.5e-232 809.7 592 67.1
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 3.3e-232 808.5 557 69.7
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 5.7e-232 807.7 590 69.7
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 7.4e-232 807.4 549 70.9
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 9.7e-232 807.0 551 70.8
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 8.2e-231 803.9 594 67.5
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.4e-230 802.4 547 69.3
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.6e-229 798.9 547 69.1
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 3.4e-229 798.5 578 67.8
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 4.5e-229 798.1 592 65.5
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 2.2e-228 795.8 584 67.3
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 2.1e-226 789.3 583 66.7
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 2.7e-226 788.9 549 69.0
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.5e-224 783.1 589 65.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 3.7e-223 778.5 588 65.6
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 2.0e-221 772.7 625 62.6
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 5.9e-221 771.2 543 68.0
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.6e-218 763.1 586 65.5
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 3.5e-213 745.3 578 64.0
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 4.5e-213 745.0 596 62.9
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.3e-212 743.4 595 63.9
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.3e-212 743.4 501 70.3
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 8.5e-212 740.7 544 64.0
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 3.2e-211 738.8 583 63.8
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.2e-210 736.9 552 64.5
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 1.8e-209 733.0 558 64.7
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 3.3e-208 728.8 556 65.5
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.2e-207 726.1 527 68.5
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 1.3e-204 716.8 512 69.1
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 8.3e-199 697.6 547 65.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 2.4e-198 696.0 588 60.0
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 5.0e-196 688.3 387 90.2
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 6.6e-196 688.0 486 68.9
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 6.1e-194 681.4 494 68.6
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.5e-192 676.8 472 67.4
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 5.6e-187 658.3 586 60.2
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 6.4e-183 644.8 544 56.1
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.4e-182 643.7 579 57.0
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 3.2e-182 642.5 545 56.5
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 5.8e-176 621.7 539 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.7e-167 593.6 540 54.3
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.5e-160 570.5 550 54.5
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 1.1e-158 564.3 413 67.1
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 2.3e-148 530.0 383 67.9
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.0e-145 519.2 565 52.0
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.1e-142 511.1 319 76.2
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 5.1e-140 502.3 320 72.5
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 3.1e-137 493.0 335 69.6
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 1.7e-135 487.3 309 73.1
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 2.7e-133 479.9 546 49.6
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.1e-131 474.6 574 43.2
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 1.6e-130 470.7 449 54.1
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 2.9e-119 433.3 400 58.0
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 3.0e-116 423.3 337 63.5
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 4.5e-104 382.9 366 51.6
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.1e-99 368.2 628 35.2
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 1.5e-91 341.3 206 80.1
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 4.9e-82 309.7 233 65.7
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.9e-78 297.7 244 59.8
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.7e-56 224.2 140 73.6
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 8.6e-55 219.2 160 64.4
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-41 175.6 158 55.7
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 3.5e-40 170.6 130 63.8
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 1.0e-39 169.1 130 58.5
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.1e-32 144.8 97 68.0
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 5.1e-31 140.2 160 48.1
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 8.1e-29 132.9 85 72.9
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 2.9e-26 124.4 100 53.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.8e-23 115.2 69 76.8
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 2.4e-20 104.8 64 71.9
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 4.9e-18 97.1 105 51.4
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.8e-15 88.6 65 67.7
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 4.3e-14 84.0 85 47.1
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 2.6e-11 74.7 42 81.0
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 5.0e-10 70.5 83 49.4
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 4.6e-08 63.9 46 65.2
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 5.7e-06 57.0 34 76.5
A05p12960 Brassica napus HOM05D002380 ORTHO05D033720 7.4e-06 56.6 43 69.8
BraA05t20236Z Brassica rapa HOM05D002380 ORTHO05D033720 7.4e-06 56.6 43 69.8
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 7.4e-06 56.6 61 50.8


User provided reference genes

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