Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 2.6e-153 545.4 290 100.0
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 3.6e-147 525.0 290 95.9
BcaC01g05890 Brassica carinata HOM05D007973 ORTHO05D011027 1.3e-115 420.2 224 100.0
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 4.0e-114 415.2 288 80.2
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 2.6e-113 412.5 289 79.6
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 2.6e-113 412.5 289 79.6
BcaC01g05892 Brassica carinata HOM05D007973 ORTHO05D011027 3.0e-69 266.2 139 98.6
Sp4g15210 Schrenkiella parvula HOM05D007973 ORTHO05D011027 4.2e-63 245.7 230 64.3
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.1e-55 221.1 341 46.3
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 7.5e-52 208.4 320 46.9
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.0e-48 198.0 347 44.1
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 4.4e-44 182.6 333 43.2
Sp4g15420 Schrenkiella parvula HOM05D007973 ORTHO05D011027 1.4e-42 177.6 246 52.0
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.3e-32 144.4 314 37.9
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.3e-32 144.4 314 37.9
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 5.1e-32 142.5 254 44.1
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 4.3e-31 139.4 342 35.7
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.2e-30 137.9 178 52.8
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 4.7e-30 136.0 338 33.4
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.1e-29 134.8 243 44.9
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.4e-29 134.4 341 34.6
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 3.1e-29 133.3 94 73.4
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 1.5e-28 131.0 131 57.3
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 2.0e-28 130.6 342 34.2
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 2.0e-28 130.6 173 48.6
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 3.4e-28 129.8 155 51.6
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 3.4e-28 129.8 92 72.8
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 3.4e-28 129.8 92 72.8
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 4.4e-28 129.4 92 70.7
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 1.7e-27 127.5 358 31.3
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 2.9e-27 126.7 335 33.1
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 3.8e-27 126.3 155 50.3
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 5.4e-26 122.5 87 72.4
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 5.4e-26 122.5 87 72.4
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 7.1e-26 122.1 180 46.7
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 2.1e-25 120.6 171 49.1
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 4.6e-25 119.4 290 32.8
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 1.3e-24 117.9 275 34.5
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 1.7e-24 117.5 287 32.8
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 2.3e-24 117.1 96 63.5
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 3.9e-24 116.3 138 54.3
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 6.6e-24 115.5 322 32.0
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 2.5e-23 113.6 291 32.0
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 2.5e-23 113.6 291 32.0
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 9.6e-23 111.7 285 33.7
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 9.6e-23 111.7 285 33.7
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.8e-22 110.2 281 30.6
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 2.8e-22 110.2 282 32.6
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.8e-22 110.2 281 30.6
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 1.1e-21 108.2 284 30.6
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 1.4e-21 107.8 287 32.8
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 1.4e-21 107.8 284 30.6
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.4e-21 107.8 178 44.9
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 2.0e-20 104.0 364 29.4
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 2.0e-20 104.0 364 29.4
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 2.2e-19 100.5 92 55.4
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 3.2e-18 96.7 113 49.6
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 5.1e-16 89.4 289 30.4
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 5.1e-16 89.4 289 30.4
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 8.7e-16 88.6 88 52.3
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 4.3e-15 86.3 286 31.5
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 9.6e-15 85.1 279 29.7
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 9.6e-15 85.1 289 29.1
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 2.8e-14 83.6 86 50.0
AL6G33790 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 3.6e-14 83.2 223 35.4
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 5.3e-13 79.3 109 45.0
CARHR123860 Cardamine hirsuta HOM05D007973 ORTHO05D011363 1.2e-12 78.2 142 40.1
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 9.9e-12 75.1 242 32.2
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 2.2e-11 73.9 242 32.2
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 6.0e-09 65.9 81 45.7
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 3.9e-08 63.2 83 39.8
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 6.7e-08 62.4 81 43.2
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 1.5e-07 61.2 81 43.2
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 1.9e-07 60.8 81 42.0
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 1.9e-07 60.8 81 42.0
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 1.9e-07 60.8 81 42.0
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 1.9e-07 60.8 81 42.0
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 3.3e-07 60.1 79 43.0
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 3.3e-07 60.1 81 42.0
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 4.3e-07 59.7 81 40.7
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 5.6e-07 59.3 259 29.3
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 1.3e-06 58.2 79 41.8
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 1.3e-06 58.2 83 39.8
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 2.1e-06 57.4 83 37.3
Aa31LG6G8590 Aethionema arabicum HOM05D007973 ORTHO05D011363 2.8e-06 57.0 84 40.5
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 2.8e-06 57.0 83 39.8
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 3.7e-06 56.6 84 39.3
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 3.7e-06 56.6 83 38.6
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 3.7e-06 56.6 83 37.3
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 4.8e-06 56.2 72 45.8
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 4.8e-06 56.2 83 37.3
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 6.2e-06 55.8 68 47.1
Sp4g14560 Schrenkiella parvula HOM05D007973 ORTHO05D011363 6.2e-06 55.8 69 42.0
Gohir.D09G215100 Gossypium hirsutum HOM05D002276 ORTHO05D002381 8.1e-06 55.5 83 37.3
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 8.1e-06 55.5 83 37.3
THA.LOC104806195 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 8.1e-06 55.5 84 35.7


User provided reference genes

Program Settings