Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 3.8e-97 358.2 187 100.0
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 9.4e-72 273.9 187 81.3
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 7.0e-67 257.7 186 75.3
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 2.6e-66 255.8 187 79.1
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 4.5e-66 255.0 188 80.3
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 4.2e-64 248.4 187 76.5
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 4.8e-60 235.0 187 72.2
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 4.8e-60 235.0 187 72.2
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 1.8e-54 216.5 187 69.0
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 1.8e-46 189.9 187 63.1
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 1.8e-46 189.9 187 63.1
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 3.4e-45 185.7 126 79.4
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.4e-38 163.7 187 57.8
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 8.9e-38 161.0 189 54.5
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 2.6e-37 159.5 185 56.8
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 2.4e-35 152.9 183 52.5
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 5.4e-35 151.8 85 89.4
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.5e-32 143.7 125 63.2
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 6.2e-31 138.3 149 55.7
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 1.5e-29 133.7 170 50.0
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 3.4e-29 132.5 142 54.9
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 6.4e-28 128.3 166 52.4
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 3.2e-27 125.9 142 52.1
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 3.2e-27 125.9 142 52.1
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 5.4e-27 125.2 180 46.7
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 5.4e-27 125.2 180 46.7
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.5e-24 117.1 117 60.7
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 8.1e-23 111.3 88 59.1
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 1.1e-22 110.9 134 48.5
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 2.2e-20 103.2 158 41.1
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.4e-19 100.5 182 38.5
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.4e-19 100.5 182 38.5
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 5.4e-19 98.6 160 38.1
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.1e-18 96.7 150 40.0
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.1e-18 96.7 150 40.0
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 6.0e-18 95.1 100 51.0
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 6.0e-18 95.1 100 51.0
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 7.8e-18 94.7 88 54.5
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 7.8e-18 94.7 88 54.5
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 1.3e-17 94.0 98 48.0
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.7e-17 93.6 181 39.8
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 2.3e-17 93.2 93 50.5
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.0e-17 92.8 140 41.4
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.9e-17 92.4 93 50.5
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.9e-17 92.4 93 50.5
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 5.1e-17 92.0 160 38.8
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 5.1e-17 92.0 104 48.1
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 5.1e-17 92.0 104 48.1
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 6.6e-17 91.7 88 48.9
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 6.6e-17 91.7 167 36.5
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 8.6e-17 91.3 84 53.6
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 8.6e-17 91.3 152 38.8
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 8.6e-17 91.3 95 53.7
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.1e-16 90.9 84 53.6
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 1.5e-16 90.5 184 34.8
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 1.5e-16 90.5 161 39.8
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 2.5e-16 89.7 155 37.4
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 2.5e-16 89.7 155 37.4
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 3.3e-16 89.4 154 37.0
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 2.7e-10 69.7 88 40.9
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 7.8e-10 68.2 81 43.2
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 1.7e-09 67.0 81 42.0
Cpa.g.c41267 Carica papaya HOM05D002276 ORTHO05D002381 1.7e-09 67.0 84 42.9
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 1.7e-09 67.0 81 42.0
Cpa.g.sc17.143 Carica papaya HOM05D007973 ORTHO05D011027 2.3e-09 66.6 77 45.5
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 3.0e-09 66.2 130 39.2
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 5.1e-09 65.5 81 40.7
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 5.1e-09 65.5 88 39.8
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 6.6e-09 65.1 130 39.2
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 6.6e-09 65.1 81 40.7
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 8.6e-09 64.7 81 42.0
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 8.6e-09 64.7 82 40.2
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 1.5e-08 63.9 88 40.9
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 3.3e-08 62.8 159 35.2
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 4.3e-08 62.4 88 38.6
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 5.6e-08 62.0 88 36.4
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 7.3e-08 61.6 69 46.4
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 7.3e-08 61.6 88 36.4
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-07 60.8 72 44.4
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 2.8e-07 59.7 155 31.0
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 4.7e-07 58.9 88 35.2
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 8.1e-07 58.2 88 37.5
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 8.1e-07 58.2 88 37.5
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 1.1e-06 57.8 85 34.1
Ah.05g171950 Amaranthus hybridus HOM05D002276 ORTHO05D002381 1.4e-06 57.4 88 38.6
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 2.4e-06 56.6 88 35.2
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 2.4e-06 56.6 81 40.7
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 3.1e-06 56.2 88 37.5
QL08p065059 Quercus lobata HOM05D002276 ORTHO05D002381 3.1e-06 56.2 85 36.5
ClCG11G005630 Citrullus lanatus HOM05D002276 ORTHO05D002381 4.0e-06 55.8 85 38.8
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 4.0e-06 55.8 88 34.1
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 4.0e-06 55.8 88 34.1
Manes.10G002900 Manihot esculenta HOM05D002276 ORTHO05D002381 6.8e-06 55.1 93 34.4
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 8.9e-06 54.7 88 34.1
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 8.9e-06 54.7 88 34.1


User provided reference genes

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