Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 1.4e-96 356.3 186 100.0
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 9.3e-72 273.9 187 81.3
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 1.2e-71 273.5 180 82.8
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 2.5e-69 265.8 181 81.8
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 5.7e-69 264.6 180 79.4
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 1.1e-61 240.4 182 74.7
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 1.5e-61 240.0 185 74.1
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 2.2e-60 236.1 182 74.2
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 6.1e-55 218.0 180 70.0
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 2.3e-46 189.5 180 63.9
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 2.3e-46 189.5 180 63.9
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 5.9e-42 174.9 126 74.6
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.5e-37 160.2 184 56.5
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 2.8e-36 156.0 172 56.4
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 4.5e-34 148.7 171 54.4
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.0e-33 147.5 159 54.1
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 1.9e-32 143.3 169 55.6
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.0e-30 137.5 112 63.4
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.5e-29 133.7 200 48.5
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 2.6e-29 132.9 184 46.7
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 7.0e-27 124.8 203 43.3
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 1.6e-26 123.6 171 49.1
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 1.6e-26 123.6 171 49.1
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 7.7e-26 121.3 204 41.2
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 7.7e-26 121.3 204 41.2
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 2.9e-25 119.4 161 49.1
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 9.5e-24 114.4 160 46.2
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 5.2e-22 108.6 130 46.9
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 6.8e-22 108.2 88 56.8
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.1e-19 100.9 92 56.5
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 1.1e-19 100.9 92 56.5
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 5.4e-19 98.6 169 37.9
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 1.2e-18 97.4 100 52.0
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 1.2e-18 97.4 100 52.0
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 2.0e-18 96.7 98 49.0
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 7.8e-18 94.7 143 39.9
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 7.8e-18 94.7 143 39.9
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 1.0e-17 94.4 88 50.0
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 1.0e-17 94.4 104 49.0
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 1.0e-17 94.4 139 41.7
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 1.0e-17 94.4 104 49.0
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 1.0e-17 94.4 139 41.7
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.3e-17 94.0 129 44.2
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 1.7e-17 93.6 84 54.8
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 2.3e-17 93.2 93 53.8
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 2.3e-17 93.2 178 36.0
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 2.9e-17 92.8 151 39.7
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.9e-17 92.8 138 41.3
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.9e-17 92.8 138 41.3
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 1.5e-16 90.5 162 38.3
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.5e-16 90.5 93 48.4
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.5e-16 90.5 141 41.8
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.5e-16 90.5 141 41.8
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 1.9e-16 90.1 169 37.3
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 1.9e-16 90.1 169 37.3
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.9e-16 90.1 84 53.6
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 2.5e-16 89.7 87 49.4
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 3.3e-16 89.4 90 52.2
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 6.1e-15 85.1 145 39.3
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 1.6e-10 70.5 88 40.9
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 1.3e-09 67.4 81 43.2
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 3.0e-09 66.2 81 42.0
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 6.6e-09 65.1 81 40.7
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 6.6e-09 65.1 81 40.7
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 8.6e-09 64.7 143 32.9
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 8.6e-09 64.7 167 34.7
Cpa.g.c41267 Carica papaya HOM05D002276 ORTHO05D002381 1.5e-08 63.9 75 45.3
Cpa.g.sc17.143 Carica papaya HOM05D007973 ORTHO05D011027 1.5e-08 63.9 75 45.3
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 1.9e-08 63.5 167 34.7
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 1.9e-08 63.5 88 37.5
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 2.5e-08 63.2 81 39.5
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 3.3e-08 62.8 81 40.7
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 3.3e-08 62.8 82 39.0
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 3.3e-08 62.8 88 39.8
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 9.5e-08 61.2 169 33.1
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 1.6e-07 60.5 88 36.4
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 2.8e-07 59.7 88 34.1
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 2.8e-07 59.7 88 34.1
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 3.6e-07 59.3 72 43.1
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 1.1e-06 57.8 88 34.1
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 1.4e-06 57.4 88 36.4
Ah.05g171950 Amaranthus hybridus HOM05D002276 ORTHO05D002381 3.1e-06 56.2 88 37.5
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 3.1e-06 56.2 67 44.8
Manes.10G002900 Manihot esculenta HOM05D002276 ORTHO05D002381 3.1e-06 56.2 93 34.4
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 5.2e-06 55.5 88 34.1
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 5.2e-06 55.5 88 34.1
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 6.8e-06 55.1 88 35.2
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 6.8e-06 55.1 81 39.5
CDE04G3441 Ceratophyllum demersum HOM05D002276 ORTHO05D002381 8.9e-06 54.7 88 33.0
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 8.9e-06 54.7 88 35.2


User provided reference genes

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