Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1785.0 896 100.0
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1408.7 933 79.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1391.7 920 79.0
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1390.2 934 77.5
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1369.8 929 77.0
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1363.6 934 77.3
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1358.2 910 77.8
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1357.0 908 78.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1350.5 934 76.8
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1349.7 935 76.5
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1345.5 927 76.5
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1342.4 931 76.0
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1278.8 930 74.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1210.7 939 70.4
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1179.5 913 70.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 0.0e+00 1088.9 923 63.9
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-257 893.3 561 82.7
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 3.6e-246 855.5 904 53.0
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.3e-245 852.8 909 51.8
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.2e-244 850.5 930 50.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.8e-244 848.2 915 52.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.7e-243 845.5 910 51.8
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.1e-241 839.7 909 50.4
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 6.0e-241 838.2 915 50.5
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.3e-240 837.0 928 50.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 2.8e-238 829.3 937 50.1
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 2.9e-235 819.3 911 50.4
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.1e-234 817.4 930 49.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.4e-234 816.2 920 50.5
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.2e-234 814.3 917 49.7
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 2.7e-233 812.8 927 50.4
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.8e-233 811.2 935 49.2
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 3.9e-232 808.9 903 49.4
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 4.3e-231 805.4 930 49.0
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 5.6e-231 805.1 945 48.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.1e-230 801.2 939 49.2
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.8e-229 800.0 890 50.2
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.8e-229 800.0 918 48.4
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.1e-229 799.3 932 49.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.0e-229 798.9 933 48.0
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 5.2e-229 798.5 916 49.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 6.9e-229 798.1 936 48.1
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.5e-228 797.0 951 47.6
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 4.4e-228 795.4 924 48.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.4e-228 795.4 924 48.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 5.8e-228 795.0 913 48.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 5.8e-228 795.0 913 48.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.8e-227 792.3 907 49.3
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 6.4e-227 791.6 931 50.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.9e-226 790.0 924 48.4
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.1e-225 786.6 907 49.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 7.8e-225 784.6 926 49.2
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-224 783.9 917 49.1
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 2.3e-224 783.1 929 49.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.3e-224 783.1 941 48.0
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 5.1e-224 781.9 898 49.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.6e-224 781.6 906 48.3
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.1e-223 780.8 923 47.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-223 780.8 920 49.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.1e-223 780.8 922 48.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 9.6e-223 777.7 920 49.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.1e-222 776.5 961 46.7
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.4e-221 773.1 912 48.1
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.1e-221 772.7 973 47.1
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 6.9e-221 771.5 921 47.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 6.9e-221 771.5 915 47.1
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.2e-220 770.8 924 48.4
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.4e-218 763.8 871 49.6
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.2e-218 762.3 885 48.5
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 7.1e-218 761.5 953 46.4
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.6e-217 760.4 910 47.5
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.3e-216 756.5 963 46.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 5.1e-216 755.4 917 46.8
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.9e-215 753.4 930 47.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.9e-215 753.4 964 46.7
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 5.6e-215 751.9 940 47.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.3e-214 750.7 933 47.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.6e-214 750.4 824 50.7
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.6e-214 750.4 931 46.6
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.8e-214 749.6 924 47.1
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.8e-214 749.6 926 47.0
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.6e-214 749.2 931 47.2
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.1e-213 746.1 925 47.5
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.5e-212 743.8 686 57.3
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 3.4e-212 742.7 893 48.3
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 9.9e-212 741.1 921 46.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 9.9e-212 741.1 921 46.3
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.7e-211 740.3 977 45.9
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.1e-210 734.9 880 48.3
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 4.3e-207 725.7 695 55.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.3e-207 725.7 919 46.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 9.6e-207 724.5 681 55.5
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 3.4e-204 716.1 892 46.4
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 7.6e-204 714.9 908 46.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.3e-203 714.1 794 50.8
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-201 707.6 918 45.4
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.3e-200 703.4 674 53.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.9e-200 702.6 801 50.1
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 8.5e-195 684.9 700 52.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.0e-192 677.9 898 44.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.8e-189 667.2 921 43.0
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.6e-185 654.1 943 42.6
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.7e-182 644.0 785 46.4
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.5e-180 637.5 772 48.3
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 4.2e-178 629.4 679 48.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 7.9e-177 625.2 684 49.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.7e-174 616.3 674 49.1
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.8e-173 614.0 913 41.8
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 9.7e-167 591.7 603 53.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.0e-152 545.0 722 45.3
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.0e-152 545.0 716 43.2
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 3.4e-151 540.0 721 43.1
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.3e-147 528.1 419 63.2
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 5.6e-146 522.7 431 61.3
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.6e-145 521.2 809 40.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.6e-139 499.2 710 42.1
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 7.3e-138 495.7 660 43.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.6e-137 494.6 637 42.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.6e-131 472.6 688 41.9
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 7.3e-122 442.6 431 58.7
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.4e-119 433.7 511 47.7
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.8e-111 406.4 680 39.0
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 6.2e-105 386.3 691 36.2
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.9e-102 377.5 252 76.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.1e-100 371.3 693 34.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.4e-96 358.6 286 62.2
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.0e-95 354.8 316 63.3
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 9.9e-95 352.4 479 42.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 4.3e-90 337.0 490 44.1
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 8.5e-78 296.2 513 39.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.4e-72 278.1 250 57.2
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.8e-67 261.9 243 56.4
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-64 252.3 260 60.0
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 7.4e-58 229.9 234 51.7
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.0e-56 223.4 184 60.9
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 4.2e-53 214.2 190 60.0
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.9e-46 191.4 175 57.7
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.2e-36 159.5 312 35.6
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.0e-35 156.4 168 47.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.8e-34 149.8 145 56.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 2.2e-33 148.7 144 53.5
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.1e-32 144.4 129 56.6
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 3.4e-26 124.8 111 61.3
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.4e-26 124.4 616 23.4
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 3.7e-25 121.3 112 52.7
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 7.0e-24 117.1 199 37.2
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 2.0e-18 99.0 111 53.2
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 2.6e-18 98.6 111 53.2
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.1e-15 89.0 78 56.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.3e-11 75.5 275 31.3
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.4e-10 71.2 93 40.9
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.9e-10 70.1 75 53.3
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 1.4e-08 66.2 49 67.3
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.3e-06 58.9 41 58.5
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 3.9e-06 58.2 170 25.3


User provided reference genes

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