Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2142.5 1118 100.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2063.1 1124 96.3
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 2046.2 1123 95.5
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 2046.2 1123 96.0
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 2035.4 1129 95.0
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1917.1 1135 89.2
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1885.9 1137 87.4
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1881.3 1130 88.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1870.1 1138 87.3
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1867.4 1129 87.3
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1841.2 1130 85.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1825.4 1086 88.5
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1797.7 1086 87.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1794.6 1087 87.7
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1788.9 1089 87.1
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1768.8 1088 86.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1759.6 1077 86.8
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1665.6 1132 78.4
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1644.0 1135 76.8
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1532.7 940 85.2
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1444.5 1130 68.8
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1422.1 1126 66.7
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1418.7 1136 67.7
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1418.7 1146 67.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1418.3 1125 67.9
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1409.4 1145 66.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1408.3 1129 66.7
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1407.9 1143 66.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1399.0 1137 66.6
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1397.1 1144 66.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1396.3 1144 65.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1394.4 1144 66.2
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1394.0 1163 65.7
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1388.2 1138 66.0
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1388.2 1148 66.5
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1387.1 1138 66.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 1140 65.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1384.4 1125 66.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1384.0 1139 66.2
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1377.8 1142 65.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1137 65.6
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1126 66.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1375.5 1136 65.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 775 94.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1373.6 1152 64.5
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1368.2 1139 65.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1142 64.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1364.7 1135 65.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1361.7 1136 65.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1357.0 1137 65.1
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1357.0 1139 65.1
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1354.7 1144 64.2
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1352.8 1145 64.3
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1351.7 1138 64.9
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1351.3 1135 65.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1349.7 1140 63.9
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1347.4 1127 64.8
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1128 64.3
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1345.5 1123 64.6
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1343.2 1124 65.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1342.4 1122 64.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1340.9 1133 64.5
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1336.6 1161 62.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1158 63.5
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1313.9 1142 63.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1306.2 1111 63.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1299.6 1129 63.0
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1270.4 1161 60.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1262.3 1083 63.9
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1257.3 1098 61.7
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1255.7 1150 60.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1254.6 1187 58.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1253.4 1099 62.0
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1250.0 1112 61.5
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1247.3 1159 59.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1245.7 1134 61.6
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1243.8 1111 61.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1238.0 1128 60.6
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1237.2 1101 60.9
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1232.6 1101 60.7
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1229.5 1132 59.8
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1225.7 1149 59.4
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1215.7 1073 61.0
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1184.9 1126 57.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1161.4 1086 58.6
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1157.1 1017 64.2
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1155.6 892 74.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1136.7 1293 52.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1136.3 936 64.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1135.2 936 64.5
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1121.3 1079 57.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1117.1 1142 56.7
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1098.2 1082 55.1
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1090.9 1088 55.8
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1080.9 1361 48.9
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.6e-304 1048.5 1067 55.5
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.3e-298 1029.2 1024 58.1
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 5.1e-298 1028.1 958 61.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.0e-295 1018.5 1127 53.9
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 1.5e-289 1000.0 1104 52.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.8e-272 941.8 1024 55.4
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 3.2e-268 929.1 931 56.1
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.0e-258 897.5 875 59.8
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.4e-257 891.3 1038 51.6
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.1e-227 793.5 1130 42.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.7e-219 765.8 1096 41.6
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.9e-218 761.5 1129 40.3
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.6e-217 760.0 1113 41.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.7e-216 756.1 1125 41.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.4e-207 726.9 888 51.9
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 9.5e-204 714.9 711 55.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.6e-193 680.2 975 46.1
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.9e-192 676.0 798 52.0
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.6e-188 661.8 1047 38.3
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 6.6e-181 639.0 645 54.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.3e-176 624.8 527 62.6
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.5e-172 610.5 422 75.1
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 2.1e-171 607.4 526 61.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.7e-171 606.7 429 74.1
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.4e-159 568.2 655 53.1
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-153 548.5 517 55.7
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.5e-127 461.1 483 58.6
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.2e-120 438.0 412 61.2
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.3e-111 407.5 345 62.9
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.5e-105 387.5 657 39.4
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.2e-102 379.0 227 78.4
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.8e-102 377.9 359 58.8
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.1e-98 365.9 818 34.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.9e-87 328.6 189 78.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.9e-87 328.6 351 49.9
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.0e-80 306.2 1094 25.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 2.5e-79 301.6 246 68.7
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 6.2e-78 297.0 225 72.9
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.6e-76 291.6 262 64.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 6.2e-70 270.4 358 45.5
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.0e-69 267.7 1266 23.3
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 6.0e-65 253.8 140 84.3
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.3e-64 251.9 193 67.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.5e-63 249.2 198 62.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.1e-61 243.0 140 92.9
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.4e-61 242.7 143 79.7
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.0e-61 241.1 140 80.7
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 7.6e-60 236.9 566 33.2
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 7.1e-50 203.8 120 79.2
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.5e-49 201.4 122 77.0
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.8e-48 199.1 119 78.2
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.0e-48 198.4 537 32.8
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.4e-45 188.7 169 66.3
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 2.4e-45 188.7 169 66.3
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 8.4e-43 180.3 135 76.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.5e-39 169.5 121 66.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.3e-39 168.3 150 62.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 5.7e-39 167.5 134 68.7
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.8e-38 165.2 1148 21.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.3e-37 161.0 135 71.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.9e-34 152.5 87 81.6
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.1e-33 149.1 82 82.9
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.7e-33 148.7 82 81.7
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 6.1e-33 147.5 132 67.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 8.8e-32 143.7 129 57.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 8.2e-30 137.1 176 44.3
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.6e-28 132.1 117 57.3
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.0e-27 130.2 114 63.2
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-25 123.2 205 44.4
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-21 109.8 161 46.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.4e-21 109.8 117 50.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.8e-21 109.4 90 71.1
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 2.2e-19 102.4 85 57.6
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.8e-19 101.7 122 54.9
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.4e-18 99.8 95 55.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.1e-17 94.4 102 49.0
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.4e-15 88.2 87 47.1
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 7.7e-12 77.4 80 53.8
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 2.3e-08 65.9 59 61.0
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.5e-07 60.8 43 62.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 3.7e-06 58.5 45 60.0


User provided reference genes

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