Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 2.4e-303 1044.6 516 100.0
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.9e-271 938.7 522 89.3
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.2e-270 936.0 522 89.1
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.6e-270 935.6 522 88.9
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.3e-267 926.0 522 88.7
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.1e-267 925.2 521 88.3
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.8e-258 895.6 523 84.5
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.8e-258 895.6 523 85.7
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.9e-252 875.5 514 84.4
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.7e-244 846.7 521 81.4
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.6e-243 845.9 521 81.8
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.3e-240 836.3 523 80.5
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.2e-233 813.1 524 77.1
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 6.1e-214 747.7 525 71.8
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.8e-213 744.2 527 68.7
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 7.5e-212 740.7 524 69.8
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.8e-211 738.0 522 70.5
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.4e-210 736.5 534 69.3
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.1e-210 735.3 522 70.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 9.1e-210 733.8 527 69.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.5e-209 731.9 528 68.8
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 7.7e-209 730.7 529 67.9
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.0e-208 730.3 551 67.2
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.7e-208 729.6 533 67.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.9e-207 726.1 533 67.9
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 2.5e-207 725.7 519 69.9
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 5.5e-207 724.5 522 69.0
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.2e-206 723.4 563 65.2
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 2.8e-206 722.2 524 69.5
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 3.6e-206 721.8 524 68.1
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.0e-205 720.3 528 68.6
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.0e-205 720.3 528 67.0
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 4.0e-205 718.4 542 66.8
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 5.2e-205 718.0 523 67.7
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 1.5e-204 716.5 523 68.1
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.5e-204 716.5 534 67.2
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.4e-204 714.9 538 66.0
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 5.7e-204 714.5 521 67.2
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.3e-203 713.4 526 66.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.7e-203 713.0 526 66.3
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 2.2e-203 712.6 526 66.7
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 5.4e-202 708.0 532 65.6
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 2.9e-200 702.2 522 66.3
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 5.0e-200 701.4 537 66.9
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 2.5e-199 699.1 567 63.0
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.2e-198 696.8 528 65.2
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 3.6e-198 695.3 528 65.2
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.8e-197 693.0 524 66.0
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.3e-197 692.6 532 64.8
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 2.6e-196 689.1 512 67.2
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 3.4e-196 688.7 540 64.1
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 8.3e-195 684.1 526 65.2
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 6.6e-192 674.5 561 61.5
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.5e-191 673.3 514 62.5
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 7.3e-191 671.0 526 63.9
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 1.2e-190 670.2 531 63.8
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.2e-190 670.2 549 61.7
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 3.6e-190 668.7 523 63.7
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 1.4e-189 666.8 529 64.1
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.3e-189 666.0 523 63.3
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 5.2e-189 664.8 524 62.0
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 1.5e-188 663.3 520 65.4
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 2.6e-188 662.5 525 63.0
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 4.4e-188 661.8 525 64.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 1.3e-187 660.2 485 67.8
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.9e-187 659.1 477 68.1
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 5.4e-186 654.8 527 61.3
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 7.0e-186 654.4 526 60.3
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.3e-184 650.2 518 62.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.5e-183 646.7 537 61.3
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 8.1e-182 641.0 500 63.2
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.3e-181 639.4 474 67.9
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.3e-179 633.6 526 62.5
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 8.6e-176 620.9 543 58.9
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.2e-173 611.7 606 54.6
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.3e-171 607.1 546 58.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 1.3e-168 597.0 514 56.8
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 8.7e-168 594.3 502 61.0
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 9.6e-167 590.9 514 57.6
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 3.5e-161 572.4 491 60.7
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 3.1e-157 559.3 521 52.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 9.9e-156 554.3 580 50.9
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.3e-155 553.9 522 54.8
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 6.7e-152 541.6 525 50.9
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.2e-148 530.8 520 50.4
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.6e-148 529.6 513 52.4
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 5.8e-148 528.5 535 53.5
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.8e-148 528.5 624 48.7
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 3.8e-147 525.8 516 53.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 2.4e-141 506.5 553 51.7
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 2.9e-139 499.6 522 48.3
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.8e-133 480.3 297 77.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 2.5e-127 459.9 511 45.0
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 4.3e-127 459.1 316 70.9
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 2.2e-118 430.3 297 67.7
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 3.1e-117 426.4 543 47.1
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 2.6e-116 423.3 298 69.8
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.5e-108 396.4 435 50.6
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.2e-102 377.1 232 77.2
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.0e-96 356.7 551 40.3
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 5.4e-93 345.9 315 58.7
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 8.6e-91 338.6 630 32.7
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.1e-89 334.0 366 53.8
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 6.8e-72 275.8 576 32.8
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 3.1e-64 250.4 566 31.4
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.7e-60 237.3 204 58.3
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 3.5e-60 236.9 236 52.5
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.2e-54 217.6 173 60.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 5.1e-51 206.5 201 52.7
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 8.7e-51 205.7 201 53.2
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.3e-49 201.8 201 53.2
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.1e-49 201.1 201 51.7
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 4.0e-48 196.8 201 52.7
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.0e-43 182.2 104 81.7
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 6.2e-33 146.4 176 49.4
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.3e-32 143.3 85 76.5
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 5.3e-24 116.7 134 47.8
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.9e-19 100.5 316 25.6
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.9e-11 73.9 348 23.3
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 6.7e-11 73.2 31 96.8
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 6.7e-11 73.2 31 96.8
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 6.7e-11 73.2 31 96.8
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 6.7e-11 73.2 31 96.8
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 2.0e-10 71.6 31 93.5
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 2.0e-10 71.6 48 75.0
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 2.4e-08 64.7 39 76.9
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.2e-07 62.4 77 41.6
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 1.0e-06 59.3 113 38.1


User provided reference genes

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