Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 0.0e+00 1102.0 547 100.0
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 6.8e-304 1046.6 537 96.6
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 1.2e-303 1045.8 537 96.5
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 1.5e-303 1045.4 537 96.5
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 1.6e-300 1035.4 539 95.7
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 1.2e-297 1025.8 539 94.8
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 1.7e-294 1015.4 538 94.4
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 1.1e-290 1002.7 537 93.1
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 4.4e-279 964.1 544 89.5
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 3.7e-278 961.1 545 88.4
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 2.0e-276 955.3 545 89.4
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 5.4e-269 930.6 541 87.2
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 1.2e-265 919.5 545 84.4
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 4.6e-260 901.0 543 84.0
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 2.7e-228 795.4 561 71.8
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 7.9e-228 793.9 535 74.6
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 1.1e-226 790.0 538 74.0
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 1.6e-225 786.2 538 73.4
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 4.8e-225 784.6 538 73.4
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 9.0e-224 780.4 536 72.2
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 1.2e-223 780.0 537 73.0
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 7.6e-223 777.3 534 72.3
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 2.9e-222 775.4 538 72.3
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 3.8e-222 775.0 555 71.2
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 3.8e-222 775.0 538 71.9
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 3.8e-222 775.0 545 71.2
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 8.4e-222 773.9 536 70.9
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 8.4e-222 773.9 536 72.0
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 1.9e-221 772.7 537 71.5
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 5.5e-221 771.2 537 71.3
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 9.3e-221 770.4 537 70.8
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 1.6e-220 769.6 536 71.5
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 3.5e-220 768.5 537 71.7
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 6.1e-220 767.7 539 72.2
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 1.1e-218 763.5 537 72.1
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 9.7e-218 760.4 537 71.7
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 8.2e-217 757.3 539 70.5
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 3.1e-216 755.4 537 69.6
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 2.0e-215 752.7 540 70.7
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 2.6e-215 752.3 524 71.4
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 2.2e-214 749.2 537 68.7
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 4.2e-213 745.0 540 69.1
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 1.2e-212 743.4 543 70.0
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 7.9e-212 740.7 539 69.9
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.4e-211 740.0 536 69.2
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 3.0e-211 738.8 537 68.7
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 6.7e-211 737.6 536 68.8
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 6.7e-211 737.6 620 62.7
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 2.5e-210 735.7 539 68.8
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 7.4e-210 734.2 538 68.4
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 1.3e-209 733.4 539 68.8
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 3.7e-209 731.9 539 68.8
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 6.3e-209 731.1 539 68.8
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 6.5e-206 721.1 538 68.8
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 1.9e-205 719.5 537 67.8
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.5e-205 719.2 539 68.3
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 4.2e-205 718.4 540 68.7
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 5.5e-205 718.0 537 68.0
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 5.5e-205 718.0 534 67.6
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 1.0e-203 713.8 572 64.3
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 2.3e-203 712.6 537 67.6
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 8.8e-203 710.7 538 68.0
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.3e-202 708.8 544 67.5
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 5.7e-202 708.0 538 65.2
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 1.7e-201 706.4 489 72.0
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 6.1e-196 688.0 539 65.3
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 8.0e-196 687.6 539 66.2
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 8.0e-196 687.6 535 63.6
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 4.4e-194 681.8 555 62.3
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 1.2e-191 673.7 536 64.9
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 7.7e-191 671.0 619 58.5
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 8.5e-190 667.5 462 71.4
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 8.5e-190 667.5 535 62.4
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 3.2e-189 665.6 535 61.9
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 9.8e-186 654.1 441 74.4
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 6.3e-185 651.4 581 58.3
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 6.3e-185 651.4 581 58.3
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 1.9e-181 639.8 473 69.8
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 4.2e-181 638.6 492 65.9
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.0e-179 634.0 606 56.8
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 1.4e-176 623.6 453 70.0
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.4e-176 622.9 600 57.5
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 1.6e-175 620.2 653 52.4
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.0e-174 615.1 539 61.0
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 3.3e-173 612.5 491 63.3
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 3.0e-166 589.3 460 66.3
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 5.8e-162 575.1 409 70.9
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 1.2e-156 557.4 546 53.1
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 2.8e-156 556.2 536 55.8
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 1.7e-153 547.0 436 65.6
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 6.4e-153 545.0 536 54.1
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.1e-144 517.7 489 56.2
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 9.9e-138 494.6 348 73.0
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 6.2e-132 475.3 343 69.4
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 6.2e-124 448.7 511 49.9
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 9.3e-120 434.9 882 33.6
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 7.4e-117 425.2 373 59.2
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 1.8e-115 420.6 301 67.8
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 4.9e-113 412.5 844 33.9
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 9.3e-112 408.3 889 31.9
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 1.9e-109 400.6 972 31.1
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 2.1e-108 397.1 966 30.7
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 2.0e-106 390.6 285 65.6
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 1.0e-105 388.3 309 64.7
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.9e-105 386.7 310 65.2
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.9e-105 386.7 237 81.4
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 5.5e-96 355.9 308 60.1
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 2.6e-93 347.1 244 68.9
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 5.5e-88 329.3 263 62.7
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 8.2e-76 288.9 196 74.0
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 8.0e-71 272.3 286 51.7
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 6.8e-70 269.2 290 52.8
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 4.4e-69 266.5 170 78.2
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 6.0e-34 149.8 129 62.0
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 5.2e-30 136.7 106 65.1
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 1.7e-28 131.7 789 22.8
Zm00001eb129170 Zea mays HOM05D006383 ORTHO05D007815 5.6e-24 116.7 103 59.2
Zm00001eb417300 Zea mays HOM05D006383 ORTHO05D007815 5.4e-19 100.1 107 55.1
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 4.8e-15 87.0 249 25.3
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 4.9e-12 77.0 68 57.4
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 6.4e-12 76.6 68 52.9
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 1.9e-11 75.1 62 66.1
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 1.1e-08 65.9 51 62.7
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 4.3e-08 63.9 71 42.3
SEGI_16502 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 1.1e-06 59.3 49 57.1
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.4e-06 58.9 43 69.8


User provided reference genes

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