Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 5.0e-199 697.6 354 100.0
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 2.7e-128 462.6 435 60.5
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 8.7e-127 457.6 436 59.4
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 1.6e-125 453.4 439 59.2
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 8.1e-125 451.1 439 59.0
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 4.0e-124 448.7 439 58.5
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 1.3e-69 267.7 365 44.9
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 1.8e-68 263.8 365 44.4
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 3.5e-67 259.6 366 44.0
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 5.9e-67 258.8 383 42.6
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 4.0e-63 246.1 362 43.1
BcaB01g02490 Brassica carinata HOM05D011698 ORTHO05D013798 1.1e-60 238.0 162 76.5
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 2.6e-38 163.7 393 33.1
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 6.6e-34 149.1 458 30.6
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 6.2e-32 142.5 406 32.3
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.2e-30 138.3 410 30.2
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 3.6e-24 116.7 438 27.9
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 6.2e-24 115.9 443 27.1
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 8.9e-23 112.1 358 30.4
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 2.9e-21 107.1 362 30.4
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 2.5e-17 94.0 502 24.3
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 4.3e-17 93.2 411 26.8
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 5.6e-17 92.8 354 27.7
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 2.1e-16 90.9 354 27.4
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 1.4e-15 88.2 370 25.1
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.0e-15 85.5 354 27.7
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 5.8e-14 82.8 164 37.2
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 5.8e-14 82.8 164 37.2
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.8e-13 80.1 355 27.0
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 4.9e-13 79.7 368 23.9
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.4e-12 78.2 145 40.0
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.4e-12 78.2 354 24.3
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.2e-12 76.6 356 27.5
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 7.1e-12 75.9 128 39.1
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 7.1e-12 75.9 128 39.1
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 7.1e-12 75.9 128 39.1
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.3e-12 75.5 133 46.6
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.2e-11 75.1 122 41.8
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.6e-11 74.7 359 27.6
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 1.6e-11 74.7 375 26.1
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 1.6e-11 74.7 378 25.7
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-11 74.3 122 42.6
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.7e-11 73.9 350 26.6
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.5e-11 73.6 128 40.6
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 3.5e-11 73.6 128 40.6
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.5e-11 73.6 69 52.2
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 4.6e-11 73.2 69 52.2
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 4.6e-11 73.2 69 52.2
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 4.6e-11 73.2 69 53.6
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.0e-11 72.8 69 53.6
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.0e-11 72.8 69 52.2
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 7.8e-11 72.4 135 44.4
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.8e-11 72.4 129 45.7
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 7.8e-11 72.4 165 40.0
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.0e-10 72.0 347 24.2
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 1.0e-10 72.0 68 52.9
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.3e-10 71.6 83 45.8
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 1.7e-10 71.2 79 46.8
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.7e-10 71.2 69 50.7
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.7e-10 71.2 123 39.8
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.7e-10 71.2 357 24.9
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 1.7e-10 71.2 64 54.7
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.7e-10 71.2 69 52.2
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.3e-10 70.9 389 23.7
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 2.3e-10 70.9 69 50.7
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.3e-10 70.9 69 50.7
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 3.0e-10 70.5 123 39.0
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.0e-10 70.5 121 41.3
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 3.0e-10 70.5 69 50.7
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 3.0e-10 70.5 69 52.2
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 3.0e-10 70.5 69 50.7
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 3.9e-10 70.1 73 47.9
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 3.9e-10 70.1 121 41.3
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 3.9e-10 70.1 69 50.7
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 5.1e-10 69.7 124 43.5
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 5.1e-10 69.7 64 53.1
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 5.1e-10 69.7 69 50.7
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 6.6e-10 69.3 68 50.0
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 6.6e-10 69.3 68 50.0
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 6.6e-10 69.3 68 50.0
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 6.6e-10 69.3 69 49.3
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 6.6e-10 69.3 69 49.3
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 6.6e-10 69.3 69 50.7
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 6.6e-10 69.3 69 50.7
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 49.3
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 49.3
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 49.3
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 49.3
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 47.8
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 47.8
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 8.7e-10 68.9 69 50.7
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 8.7e-10 68.9 165 34.5
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 1.1e-09 68.6 69 50.7
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.1e-09 68.6 69 49.3
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 1.1e-09 68.6 69 50.7
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 1.1e-09 68.6 69 50.7
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 1.1e-09 68.6 69 49.3
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 1.5e-09 68.2 69 49.3
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.5e-09 68.2 69 49.3
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.5e-09 68.2 352 24.7
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.5e-09 68.2 69 49.3
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.9e-09 67.8 69 47.8
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 1.9e-09 67.8 78 46.2
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.9e-09 67.8 69 49.3
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 1.9e-09 67.8 79 45.6
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.9e-09 67.8 69 52.2
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.3e-09 66.6 67 49.3
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 5.6e-09 66.2 69 46.4
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 5.6e-09 66.2 68 48.5
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 7.3e-09 65.9 69 47.8
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 7.3e-09 65.9 70 47.1
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 9.6e-09 65.5 70 42.9
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 9.6e-09 65.5 68 50.0
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 9.6e-09 65.5 68 50.0
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 9.6e-09 65.5 68 50.0
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 9.6e-09 65.5 139 32.4
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.3e-08 65.1 358 24.0
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.3e-08 65.1 64 48.4
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.6e-08 64.7 73 46.6
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.6e-08 64.7 68 51.5
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.1e-08 64.3 138 33.3
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.1e-08 64.3 359 23.7
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 2.8e-08 63.9 68 45.6
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 2.8e-08 63.9 68 48.5
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 3.6e-08 63.5 73 45.2
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 3.6e-08 63.5 69 44.9
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 4.8e-08 63.2 70 41.4
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.8e-08 63.2 69 47.8
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 4.8e-08 63.2 84 40.5
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 4.8e-08 63.2 73 45.2
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.2e-08 62.8 325 25.2
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.2e-08 62.8 64 48.4
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 8.1e-08 62.4 358 24.3
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 1.1e-07 62.0 72 44.4
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.8e-07 61.2 83 41.0
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.8e-07 61.2 83 41.0
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 2.4e-07 60.8 81 38.3
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 2.4e-07 60.8 67 44.8
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.1e-07 60.5 69 46.4
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 4.0e-07 60.1 68 45.6
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 5.3e-07 59.7 177 28.8
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 5.3e-07 59.7 177 28.8
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.3e-07 59.7 132 29.5
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 5.3e-07 59.7 69 43.5
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 5.3e-07 59.7 68 45.6
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-06 58.2 138 33.3
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.5e-06 58.2 69 40.6
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.5e-06 58.2 68 44.1
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 2.0e-06 57.8 338 26.9
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.0e-06 57.8 134 27.6
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.5e-06 56.6 70 41.4
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 4.5e-06 56.6 67 40.3
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 5.8e-06 56.2 83 36.1
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.6e-06 55.8 129 28.7
Zm00001eb225210 Zea mays HOM05D003286 ORTHO05D002463 7.6e-06 55.8 64 45.3


User provided reference genes

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