Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.9e-147 525.8 256 100.0
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 3.9e-145 518.1 256 98.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 5.1e-145 517.7 256 98.0
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 6.7e-145 517.3 256 98.4
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.5e-144 516.2 253 99.2
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.5e-144 516.2 253 99.2
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 4.3e-144 514.6 253 98.4
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 4.3e-144 514.6 253 99.2
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 5.6e-144 514.2 256 97.7
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.1e-143 512.3 256 97.3
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.1e-143 512.3 256 97.3
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.8e-143 511.9 253 98.4
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-142 506.9 253 97.6
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.5e-141 506.1 256 96.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 2.0e-141 505.8 253 97.6
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.0e-140 503.4 256 97.3
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.1e-139 500.0 253 97.6
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.1e-139 500.0 253 97.6
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 6.0e-138 494.2 256 93.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 5.3e-134 481.1 256 91.0
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.9e-132 475.3 257 90.7
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 5.5e-131 471.1 256 90.2
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.2e-130 469.9 256 88.7
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 2.1e-130 469.2 256 89.1
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.7e-130 468.8 256 87.9
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 3.6e-130 468.4 256 89.5
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 3.6e-130 468.4 256 89.5
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.9e-130 467.2 256 88.7
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 7.9e-130 467.2 256 89.1
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.4e-129 466.5 256 88.7
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 3.0e-129 465.3 256 86.7
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 3.9e-129 464.9 256 89.1
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.7e-129 464.2 256 89.5
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 6.7e-129 464.2 256 89.1
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 8.8e-129 463.8 256 88.7
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 8.8e-129 463.8 256 87.1
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 8.8e-129 463.8 256 87.5
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 88.3
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 88.7
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 87.9
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 87.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-128 463.0 256 88.3
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.9e-128 462.6 256 89.5
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.9e-128 462.6 256 86.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.5e-128 462.2 256 88.3
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-128 462.2 256 88.3
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 4.3e-128 461.5 256 87.1
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.3e-128 461.5 256 87.9
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.7e-128 461.1 256 87.9
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 5.7e-128 461.1 256 87.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.4e-128 460.7 256 87.5
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 9.7e-128 460.3 256 88.3
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 9.7e-128 460.3 256 87.1
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.3e-127 459.9 256 88.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.7e-127 459.5 256 87.5
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 1.7e-127 459.5 256 87.1
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.7e-127 459.5 256 87.9
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.8e-127 458.8 256 87.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.7e-127 458.4 256 87.9
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.8e-127 458.0 253 88.1
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 6.3e-127 457.6 256 87.1
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 6.3e-127 457.6 256 87.1
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 6.3e-127 457.6 256 86.3
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 8.2e-127 457.2 256 86.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-126 456.8 256 86.7
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.4e-126 456.4 256 87.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.4e-126 455.7 256 86.3
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.4e-126 455.7 256 85.9
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.4e-126 455.7 256 86.3
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 4.1e-126 454.9 256 87.9
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.1e-126 454.9 256 85.9
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 85.9
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 86.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 86.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 85.9
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 87.1
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 4.5e-125 451.4 256 85.5
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 5.9e-125 451.1 256 86.3
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 85.5
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 85.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 85.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.5e-124 447.6 256 85.9
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 6.5e-124 447.6 255 84.7
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 8.5e-124 447.2 256 84.4
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 8.5e-124 447.2 256 84.4
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 85.0
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.5e-123 445.7 256 83.6
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.5e-123 445.7 263 85.2
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 7.2e-123 444.1 255 82.7
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 7.2e-123 444.1 253 85.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 7.2e-123 444.1 254 84.3
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 9.4e-123 443.7 256 84.8
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.2e-122 443.4 256 84.8
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.1e-122 442.6 256 83.2
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.7e-122 441.4 253 85.8
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 7.9e-122 440.7 253 85.8
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 7.9e-122 440.7 256 84.0
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-121 440.3 256 84.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.4e-121 439.9 256 83.2
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 5.1e-121 438.0 307 73.6
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.3e-120 435.3 256 83.2
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 9.7e-120 433.7 256 84.0
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.8e-118 429.5 241 87.6
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 4.1e-118 428.3 256 80.5
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 6.9e-118 427.6 257 80.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 6.9e-118 427.6 256 82.8
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.6e-117 425.6 241 87.1
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.0e-116 423.7 257 79.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.2e-116 422.5 283 75.6
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 3.8e-116 421.8 257 78.6
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.2e-115 418.7 295 74.2
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.2e-114 416.8 269 75.1
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.1e-112 410.2 233 81.1
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.8e-110 402.9 260 79.2
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.8e-108 395.2 256 79.3
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 3.2e-107 392.1 220 85.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.2e-104 383.6 250 78.4
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.5e-104 383.3 230 77.4
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.3e-104 382.1 229 76.9
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 9.7e-104 380.6 259 75.7
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 2.8e-103 379.0 253 70.4
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 7.7e-101 370.9 272 66.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.3e-100 370.2 320 64.1
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.9e-100 369.0 232 74.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.9e-100 369.0 232 74.6
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.0e-97 360.5 241 78.0
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.8e-97 359.8 256 72.3
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.6e-96 355.9 260 69.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 9.8e-96 354.0 257 67.3
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 4.8e-95 351.7 200 82.0
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 3.1e-94 349.0 257 66.1
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.1e-94 349.0 260 69.6
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.3e-92 342.8 286 67.5
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.8e-86 323.2 201 79.6
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 2.0e-80 303.1 160 90.0
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 2.6e-80 302.8 161 89.4
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 4.4e-80 302.0 248 58.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 6.4e-79 298.1 162 86.4
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-77 293.9 172 85.5
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.8e-72 275.0 169 79.9
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.2e-70 269.2 234 53.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 7.0e-70 268.1 162 82.1
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.5e-67 260.4 135 91.1
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.6e-67 258.5 269 56.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.2e-58 230.7 116 96.6
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.6e-56 223.0 118 89.0
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.1e-49 199.5 194 46.9
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.3e-47 194.1 101 94.1
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 6.6e-44 181.8 211 46.4
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.1e-43 181.0 121 73.6
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 2.5e-43 179.9 100 87.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.1e-42 176.8 165 58.8
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 5.8e-40 168.7 83 92.8
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.7e-39 167.2 101 83.2
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 5.4e-38 162.2 84 85.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-35 153.7 89 80.9
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 5.6e-35 152.1 97 81.4
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.4e-35 151.8 83 84.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.0e-33 146.0 89 77.5
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.0e-33 144.8 89 76.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.4e-32 142.9 77 84.4
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.3e-31 141.0 89 75.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.3e-30 134.8 81 79.0
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.6e-29 134.0 81 79.0
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.0e-28 129.8 81 76.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.9e-28 129.4 75 80.0
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.9e-28 129.4 75 80.0
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.9e-28 129.4 75 80.0
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.9e-28 129.4 75 80.0
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.5e-27 127.5 75 78.7
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-27 127.5 84 76.2
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.8e-26 122.5 75 76.0
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.1e-25 119.8 71 78.9
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-25 119.8 82 75.6
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.2e-24 117.9 76 75.0
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 3.3e-11 73.2 42 81.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.2e-10 70.5 56 67.9


User provided reference genes

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