Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 6.0e-266 920.2 448 100.0
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.4e-238 829.3 456 90.6
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 9.0e-238 826.6 455 90.5
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 2.6e-237 825.1 455 90.3
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 2.6e-237 825.1 455 90.3
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 4.5e-237 824.3 455 89.9
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.8e-231 805.1 457 86.0
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.8e-231 805.1 457 86.0
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 2.8e-231 805.1 459 86.3
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 6.5e-228 793.9 453 85.2
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 6.0e-226 787.3 455 85.1
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.3e-223 779.6 460 84.3
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 4.3e-216 754.6 449 82.9
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 5.0e-204 714.5 479 75.4
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 2.0e-184 649.4 455 71.0
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.6e-165 586.6 446 63.5
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 6.0e-165 584.7 445 64.3
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.7e-164 583.2 446 64.6
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 5.0e-164 581.6 450 61.8
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.1e-163 580.5 463 62.2
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.5e-163 580.1 450 61.6
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 1.9e-163 579.7 445 63.6
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 4.3e-163 578.6 454 62.3
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 3.6e-162 575.5 455 62.6
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 8.0e-162 574.3 453 61.1
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 8.0e-162 574.3 470 60.9
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.8e-161 573.2 448 62.5
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 5.2e-161 571.6 472 60.8
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 2.0e-160 569.7 444 62.4
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 2.6e-160 569.3 450 61.8
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 4.4e-160 568.5 473 59.6
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 7.5e-160 567.8 447 62.2
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 9.8e-160 567.4 450 61.3
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 2.2e-159 566.2 455 60.9
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 2.2e-159 566.2 473 59.4
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 1.4e-158 563.5 451 61.6
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.9e-158 563.1 473 58.8
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.4e-158 562.8 463 60.0
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 1.2e-157 560.5 453 60.0
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.1e-157 559.7 476 59.2
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 3.5e-157 558.9 468 59.8
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 4.6e-157 558.5 464 61.2
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 4.6e-157 558.5 454 61.5
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 4.6e-157 558.5 473 59.0
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 7.8e-157 557.8 462 59.3
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.0e-156 557.4 456 59.9
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.0e-156 557.4 451 59.9
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 8.6e-156 554.3 479 58.2
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 3.3e-155 552.4 452 60.2
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 5.6e-155 551.6 462 59.3
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 7.3e-155 551.2 456 59.0
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 9.5e-155 550.8 448 60.9
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 8.1e-154 547.7 453 59.2
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 8.1e-154 547.7 457 58.2
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 8.9e-153 544.3 457 59.3
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 2.0e-152 543.1 454 58.4
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 2.6e-152 542.7 456 59.2
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 3.7e-151 538.9 435 61.4
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.1e-150 537.3 486 54.3
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 2.4e-150 536.2 453 58.9
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.4e-150 536.2 479 56.2
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 7.1e-150 534.6 461 58.1
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 1.2e-149 533.9 465 57.8
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 2.1e-149 533.1 456 57.9
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.0e-148 530.8 453 59.2
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.1e-148 528.5 440 58.6
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 6.6e-148 528.1 455 57.8
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.3e-147 525.4 440 58.4
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 4.3e-147 525.4 451 58.5
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 5.6e-147 525.0 436 60.1
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 1.2e-146 523.9 455 57.1
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 4.7e-146 521.9 464 56.0
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 1.4e-145 520.4 460 57.4
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 1.8e-145 520.0 491 53.0
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 9.9e-144 514.2 483 54.9
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 3.8e-143 512.3 519 51.1
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.4e-142 510.4 473 56.0
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 7.1e-142 508.1 473 55.4
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.2e-141 507.3 489 53.8
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 6.0e-141 505.0 402 62.9
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 2.5e-139 499.6 464 53.7
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.4e-137 493.8 487 50.9
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 7.6e-136 488.0 419 58.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 6.4e-135 485.0 406 59.6
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 6.4e-135 485.0 458 53.9
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.9e-127 459.5 472 50.6
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 1.1e-126 457.6 465 51.8
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 4.2e-126 455.7 439 52.6
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 4.6e-125 452.2 377 58.6
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 3.0e-124 449.5 377 58.6
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.9e-123 446.8 432 50.5
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 5.3e-121 438.7 349 61.3
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.9e-119 433.0 366 57.9
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 5.5e-118 428.7 355 60.3
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 4.6e-117 425.6 336 60.1
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.1e-113 414.5 447 48.5
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.2e-112 411.0 450 47.6
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 2.9e-111 406.4 349 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 4.2e-110 402.5 447 46.8
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 1.9e-107 393.7 519 40.3
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 3.6e-101 372.9 485 42.3
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 1.5e-96 357.5 346 53.5
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 2.9e-95 353.2 295 60.7
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 3.0e-92 343.2 445 39.6
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 4.0e-76 289.7 434 40.3
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 2.6e-75 287.0 441 37.6
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 1.9e-62 244.2 233 51.9
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 1.4e-49 201.4 469 29.9
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 6.2e-45 186.0 278 37.8
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.2e-43 181.8 215 42.3
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.0e-39 168.7 471 29.1
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.1e-39 166.4 154 57.1
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.9e-38 164.5 154 55.8
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 3.1e-36 157.1 232 40.9
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.1e-23 113.2 211 37.0
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 2.5e-22 110.9 113 52.2
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 3.1e-20 104.0 815 20.2
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 1.6e-16 91.7 106 50.0
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.9e-14 84.7 45 86.7
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.6e-13 81.6 74 56.8
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 6.9e-12 76.3 63 47.6
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 4.6e-08 63.5 48 52.1
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.6e-08 63.5 69 52.2
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 3.9e-07 60.5 72 45.8
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.5e-06 58.5 65 43.1
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.5e-06 58.5 65 43.1


User provided reference genes

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