Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02009 Brassica carinata HOM05D002943 ORTHO05D002685 8.2e-44 179.9 83 100.0
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 1.3e-20 102.8 53 88.7
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 2.8e-20 101.7 53 86.8
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 6.3e-20 100.5 80 63.8
BcaC03g16173 Brassica carinata HOM05D002943 ORTHO05D002685 5.3e-19 97.4 80 61.2
C02p39070 Brassica napus HOM05D002943 ORTHO05D002685 5.3e-19 97.4 80 61.2
BolC2t09917H Brassica oleracea HOM05D002943 ORTHO05D002685 5.3e-19 97.4 80 61.2
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 9.1e-19 96.7 53 83.0
A02p24970 Brassica napus HOM05D002943 ORTHO05D002685 1.2e-18 96.3 80 60.0
BraA02t07487Z Brassica rapa HOM05D002943 ORTHO05D002685 1.2e-18 96.3 80 60.0
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 2.7e-18 95.1 53 83.0
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 3.5e-18 94.7 53 81.1
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 3.5e-18 94.7 53 81.1
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 1.0e-17 93.2 80 56.2
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 2.2e-17 92.0 80 58.8
ClCG09G007120 Citrullus lanatus HOM05D002943 ORTHO05D002685 2.9e-17 91.7 80 56.2
MELO3C015824.2 Cucumis melo HOM05D002943 ORTHO05D002685 2.9e-17 91.7 80 55.0
CsaV3_7G028040 Cucumis sativus L. HOM05D002943 ORTHO05D002685 2.9e-17 91.7 80 55.0
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 3.8e-17 91.3 80 56.2
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 3.8e-17 91.3 53 77.4
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 5.0e-17 90.9 53 75.5
Haze_04694 Corylus avellana HOM05D002943 ORTHO05D002685 6.5e-17 90.5 81 51.9
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 8.5e-17 90.1 81 51.9
AL6G50240 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.1e-16 89.7 53 79.2
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 1.1e-16 89.7 80 56.2
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.9e-16 89.0 53 75.5
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 1.9e-16 89.0 53 75.5
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 2.5e-16 88.6 69 58.0
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 3.2e-16 88.2 53 75.5
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 4.2e-16 87.8 83 49.4
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 5.5e-16 87.4 54 66.7
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 7.2e-16 87.0 53 67.9
Dinv34766 Davidia involucrata HOM05D002943 ORTHO05D002685 7.2e-16 87.0 80 56.2
ECA247G3845 Erigeron canadensis HOM05D002943 ORTHO05D002685 7.2e-16 87.0 80 53.8
Lj5g0020766 Lotus japonicus HOM05D002943 ORTHO05D002685 7.2e-16 87.0 80 51.2
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 7.2e-16 87.0 80 56.2
Ah.11g050560 Amaranthus hybridus HOM05D002943 ORTHO05D002685 9.4e-16 86.7 46 80.4
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 9.4e-16 86.7 53 69.8
Prupe.8G239500 Prunus persica HOM05D002943 ORTHO05D002685 9.4e-16 86.7 80 52.5
SHI25865 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-16 86.7 54 68.5
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 9.4e-16 86.7 53 71.7
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 1.2e-15 86.3 53 71.7
Glyma.02G146800 Glycine max HOM05D002943 ORTHO05D002685 1.6e-15 85.9 80 52.5
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 1.6e-15 85.9 80 51.2
ATR0332G039 Amborella trichopoda HOM05D002943 ORTHO05D002685 2.1e-15 85.5 53 69.8
Aqoxy2G03372 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 2.1e-15 85.5 53 69.8
Psat6g060720 Pisum sativum HOM05D002943 ORTHO05D002685 2.1e-15 85.5 69 55.1
vmacro02583 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 2.1e-15 85.5 82 51.2
Lsat_1_v5_gn_9_3501 Lactuca sativa HOM05D002943 ORTHO05D002685 2.7e-15 85.1 46 76.1
Lj2A1170T16 Lonicera japonica HOM05D002943 ORTHO05D002685 2.7e-15 85.1 80 55.0
Phvul.007G172600 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 2.7e-15 85.1 80 52.5
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 2.7e-15 85.1 80 52.5
CDE05G3340 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 3.6e-15 84.7 53 71.7
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 3.6e-15 84.7 53 73.6
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 4.7e-15 84.3 80 51.2
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 6.1e-15 84.0 45 77.8
EL10Ac5g10558 Beta vulgaris HOM05D002943 ORTHO05D002685 1.0e-14 83.2 46 71.7
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.0e-14 83.2 45 80.0
Zm00001eb276600 Zea mays HOM05D002943 ORTHO05D002685 1.0e-14 83.2 45 80.0
SGA_v2.0_scaffold1G00490 Striga asiatica HOM05D002943 ORTHO05D002685 3.0e-14 81.6 45 73.3
arahy.Tifrunner.gnm1.ann1.NISQ8K Arachis hypogaea HOM05D002943 ORTHO05D002685 4.0e-14 81.3 80 47.5
MSTRG.18239 Avicennia marina HOM05D002943 ORTHO05D002685 4.0e-14 81.3 66 54.5
Ca_09752_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 4.0e-14 81.3 53 64.2
Eucgr.K03366 Eucalyptus grandis HOM05D002943 ORTHO05D002685 4.0e-14 81.3 69 50.7
PGR044G0058 Punica granatum HOM05D002943 ORTHO05D002685 6.8e-14 80.5 69 53.6
DCAR_012486 Daucus carota HOM05D002943 ORTHO05D002685 1.2e-13 79.7 46 69.6
Glyma.10G027100 Glycine max HOM05D002943 ORTHO05D002685 1.2e-13 79.7 53 66.0
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 4.4e-13 77.8 53 67.9
Lsat_1_v5_gn_4_28161 Lactuca sativa HOM05D002943 ORTHO05D002685 9.8e-13 76.6 53 67.9
SGA_v2.0_scaffold138G35332 Striga asiatica HOM05D002943 ORTHO05D002685 2.2e-12 75.5 45 68.9
AagrBONN_evm.TU.Sc2ySwM_295.9 Anthoceros agrestis HOM05D009278 ORTHO05D002685 3.7e-12 74.7 83 48.2
SalBow4G2517 Salvia bowleyana HOM05D002943 ORTHO05D002685 3.7e-12 74.7 80 55.0
AagrBONN_evm.TU.Sc2ySwM_261.2 Anthoceros agrestis HOM05D009278 ORTHO05D002685 4.1e-11 71.2 54 59.3
AagrBONN_evm.TU.Sc2ySwM_292.2 Anthoceros agrestis HOM05D002943 ORTHO05D002685 4.1e-11 71.2 54 59.3
Hund02771 Selenicereus undatus HOM05D002943 ORTHO05D002685 7.0e-11 70.5 45 71.1
AagrBONN_evm.TU.Sc2ySwM_253.2 Anthoceros agrestis HOM05D009278 ORTHO05D002685 9.1e-11 70.1 44 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2446 Anthoceros agrestis HOM05D009278 ORTHO05D002685 9.1e-11 70.1 44 63.6
Haze_27348 Corylus avellana HOM05D002943 ORTHO05D002685 1.2e-10 69.7 70 48.6
Peaxi162Scf00939g00121 Petunia axillaris HOM05D002943 ORTHO05D002685 2.7e-10 68.6 39 79.5
AagrBONN_evm.TU.Sc2ySwM_368.1648 Anthoceros agrestis HOM05D002943 ORTHO05D002685 5.0e-09 64.3 46 58.7
TAR365G0759 Trochodendron aralioides HOM05D002943 ORTHO05D002685 4.2e-08 61.2 37 73.0
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 1.8e-06 55.8 37 62.2
SEGI_40787 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 5.2e-06 54.3 34 70.6


User provided reference genes

Program Settings