Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 1.1e-245 852.8 436 100.0
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 7.0e-78 295.4 513 42.5
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 8.6e-76 288.5 552 40.2
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 2.5e-75 287.0 541 41.0
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 6.0e-61 239.2 517 39.1
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 5.1e-36 156.4 372 37.4
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 5.1e-36 156.4 372 37.4
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 6.9e-33 146.0 491 31.6
BcaB01g01994 Brassica carinata HOM05D003286 ORTHO05D020140 1.5e-32 144.8 214 50.5
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 4.2e-30 136.7 458 30.6
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 5.3e-25 119.8 456 29.8
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 4.5e-24 116.7 470 28.5
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 1.0e-23 115.5 469 29.2
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 4.1e-17 93.6 473 27.5
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 4.1e-17 93.6 471 27.6
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 5.3e-17 93.2 473 27.5
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 3.4e-16 90.5 168 41.1
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 1.6e-13 81.6 155 37.4
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.8e-12 78.2 94 52.1
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 3.0e-12 77.4 95 45.3
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.0e-12 77.4 81 53.1
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 3.9e-12 77.0 125 37.6
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 3.9e-12 77.0 96 43.8
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 8.7e-12 75.9 95 45.3
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 1.1e-11 75.5 95 44.2
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.5e-11 75.1 99 49.5
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 7.4e-11 72.8 158 34.2
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 7.4e-11 72.8 158 34.2
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.3e-10 72.0 105 45.7
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.6e-10 71.6 94 47.9
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.6e-10 71.6 94 47.9
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.6e-10 71.6 94 47.9
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 2.2e-10 71.2 93 46.2
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 6.3e-10 69.7 94 46.8
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 6.3e-10 69.7 94 46.8
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.3e-10 69.7 73 47.9
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 6.3e-10 69.7 82 42.7
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 1.1e-09 68.9 117 38.5
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-09 68.9 93 46.2
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.1e-09 68.9 93 46.2
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.1e-09 68.9 93 46.2
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.1e-09 68.9 82 50.0
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.4e-09 68.6 160 36.9
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 1.4e-09 68.6 93 45.2
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.4e-09 67.8 91 48.4
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 2.4e-09 67.8 93 45.2
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 2.4e-09 67.8 82 42.7
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.1e-09 67.4 96 39.6
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 3.1e-09 67.4 96 39.6
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 3.1e-09 67.4 98 41.8
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.1e-09 67.0 102 42.2
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 4.1e-09 67.0 234 30.8
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.3e-09 66.6 86 50.0
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 6.9e-09 66.2 82 41.5
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 9.0e-09 65.9 180 32.2
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 9.0e-09 65.9 177 33.3
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 9.0e-09 65.9 90 44.4
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.2e-08 65.5 95 42.1
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-08 65.1 104 41.3
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.5e-08 65.1 73 47.9
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 2.6e-08 64.3 122 34.4
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 3.4e-08 63.9 86 40.7
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.5e-08 63.5 81 48.1
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 4.5e-08 63.5 87 39.1
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.9e-08 63.2 96 38.5
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 7.7e-08 62.8 92 41.3
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.7e-08 62.8 98 42.9
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 7.7e-08 62.8 157 33.8
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 7.7e-08 62.8 87 40.2
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 7.7e-08 62.8 83 41.0
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.0e-07 62.4 94 44.7
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 1.0e-07 62.4 67 49.3
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 1.3e-07 62.0 96 37.5
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.7e-07 61.6 82 37.8
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 2.2e-07 61.2 102 33.3
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 2.9e-07 60.8 90 37.8
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 2.9e-07 60.8 76 44.7
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 2.9e-07 60.8 96 40.6
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.8e-07 60.5 164 36.0
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 5.0e-07 60.1 90 37.8
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 6.5e-07 59.7 67 47.8
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 6.5e-07 59.7 87 35.6
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 8.5e-07 59.3 93 43.0
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 8.5e-07 59.3 93 43.0
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.5e-07 59.3 73 49.3
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 8.5e-07 59.3 77 40.3
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.1e-06 58.9 94 37.2
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 1.1e-06 58.9 66 42.4
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.1e-06 58.9 73 43.8
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.1e-06 58.9 76 42.1
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 1.4e-06 58.5 81 44.4
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 1.4e-06 58.5 81 44.4
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 1.4e-06 58.5 71 47.9
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.9e-06 58.2 89 41.6
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.9e-06 58.2 140 32.1
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 1.9e-06 58.2 70 41.4
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.9e-06 58.2 77 39.0
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 1.9e-06 58.2 73 41.1
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.5e-06 57.8 82 43.9
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 2.5e-06 57.8 88 39.8
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 2.5e-06 57.8 89 37.1
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 2.5e-06 57.8 95 38.9
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 2.5e-06 57.8 82 39.0
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 3.2e-06 57.4 90 36.7
Potri.008G119700 Populus trichocarpa HOM05D001266 ORTHO05D001105 3.2e-06 57.4 99 37.4
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.2e-06 57.4 69 42.0
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 4.2e-06 57.0 102 33.3
BcaB01g02490 Brassica carinata HOM05D011698 ORTHO05D013798 5.5e-06 56.6 85 45.9
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 5.5e-06 56.6 82 40.2
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 5.5e-06 56.6 82 40.2
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.5e-06 56.6 93 39.8
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 7.2e-06 56.2 83 36.1
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 7.2e-06 56.2 95 38.9
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 7.2e-06 56.2 95 38.9
Thhalv10029479m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 7.2e-06 56.2 75 44.0
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 7.2e-06 56.2 70 47.1
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 7.2e-06 56.2 94 36.2
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.4e-06 55.8 85 42.4
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 9.4e-06 55.8 73 42.5
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 9.4e-06 55.8 72 43.1
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 9.4e-06 55.8 82 39.0


User provided reference genes

Program Settings