Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1636.3 809 100.0
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1552.7 809 94.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1545.4 810 94.3
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1539.2 811 94.3
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1538.1 811 94.3
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1536.5 812 94.5
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1488.4 815 90.2
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1486.5 817 89.7
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1480.7 817 89.8
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1473.0 818 89.6
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1470.3 816 89.6
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1335.9 793 84.6
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 0.0e+00 1281.2 686 91.8
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1218.4 752 77.1
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1216.4 784 75.0
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1210.7 812 72.4
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 814 73.1
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1210.3 816 73.2
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 788 73.9
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 807 73.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1208.4 811 72.5
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1206.4 749 76.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1204.1 788 73.6
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1203.3 801 73.2
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1203.3 790 74.3
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 776 74.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 804 73.3
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 808 72.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1199.5 797 72.5
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 754 75.6
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1194.9 802 72.2
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1194.1 816 71.9
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1191.8 747 76.3
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 809 72.7
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1187.2 803 72.1
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1186.8 745 76.6
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1185.2 799 71.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1182.5 825 71.3
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1180.6 771 73.0
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1179.9 805 71.2
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 771 72.5
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 819 70.2
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 788 72.5
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 786 72.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 746 75.1
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 746 74.4
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1173.3 797 72.1
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 790 71.3
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 749 74.1
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 803 70.5
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 815 70.6
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1169.8 762 73.4
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1168.3 809 70.7
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1167.9 769 72.2
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1167.5 778 73.1
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 749 73.6
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1165.6 749 74.4
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 805 70.9
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 818 70.9
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 810 69.6
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 779 71.5
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1157.5 800 70.4
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1153.7 814 69.7
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1153.7 742 73.3
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1152.9 812 69.1
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1150.6 769 72.4
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1150.6 831 69.9
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1146.3 810 69.0
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1142.9 805 70.2
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1142.9 809 68.4
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1139.0 795 69.8
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1136.7 746 72.3
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1135.9 795 68.3
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1135.2 817 69.5
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1129.8 845 67.6
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1123.6 777 71.0
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1121.3 807 68.2
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1107.8 771 69.3
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1092.4 768 70.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1089.3 820 64.8
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1088.6 760 68.9
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 9.3e-310 1066.6 699 73.0
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.9e-307 1058.9 664 75.8
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 9.6e-307 1056.6 808 66.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.6e-306 1055.8 836 63.8
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 4.8e-306 1054.3 685 73.6
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 2.4e-305 1052.0 687 73.5
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 3.4e-304 1048.1 695 71.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 1.4e-297 1026.2 758 67.3
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 3.6e-293 1011.5 738 66.7
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 3.9e-292 1008.1 897 59.3
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.6e-280 969.5 745 62.0
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 1.6e-277 959.5 740 60.7
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.3e-276 955.7 625 73.8
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 7.5e-267 924.1 748 58.2
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-255 887.1 607 70.5
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.0e-251 872.8 635 65.5
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 6.4e-234 814.7 623 62.3
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.3e-231 807.0 688 60.3
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-214 750.4 677 53.9
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 2.7e-200 703.0 523 64.1
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 8.5e-170 601.7 791 43.0
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 7.7e-147 525.4 351 67.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 3.3e-137 493.4 595 47.4
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.5e-121 441.4 345 64.6
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 9.0e-95 352.4 264 64.4
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.1e-81 308.9 286 59.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-75 286.6 223 63.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 6.3e-72 276.6 254 57.5
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 7.9e-59 233.0 150 72.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 7.0e-47 193.4 122 73.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 4.8e-40 170.6 133 63.2
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.1e-39 167.5 123 65.0
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 7.0e-39 166.8 110 69.1
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.4e-26 125.9 94 61.7
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 5.7e-25 120.6 157 43.3
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 2.7e-22 111.7 107 46.7
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.4e-18 99.4 114 52.6
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.9e-16 91.7 62 71.0
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 6.4e-16 90.5 56 78.6
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.6e-13 80.1 43 79.1
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.9e-12 79.0 45 77.8
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.5e-09 69.3 41 80.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 7.5e-09 67.0 70 54.3
A03p30560 Brassica napus HOM05D000161 ORTHO05D042129 4.9e-08 64.3 44 77.3


User provided reference genes

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