Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 2.3e-126 455.7 245 100.0
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 7.6e-114 414.1 255 89.0
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 7.6e-114 414.1 255 89.4
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.3e-110 403.3 255 87.1
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.3e-110 403.3 255 87.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.4e-107 393.3 255 84.7
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 5.5e-104 381.3 255 80.4
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.3e-104 380.6 255 82.7
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.2e-103 380.2 255 82.4
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 6.0e-103 377.9 255 82.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.0e-102 377.1 255 82.0
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 7.2e-96 354.4 251 76.9
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 2.8e-84 315.8 255 70.2
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 2.4e-83 312.8 255 69.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.9e-81 305.8 257 66.9
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 9.1e-75 284.3 256 63.7
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.9e-72 276.6 255 61.2
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.9e-72 276.6 256 60.9
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.5e-72 275.0 256 61.7
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.2e-71 273.9 256 61.3
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.7e-71 272.7 255 62.7
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 3.6e-71 272.3 256 61.3
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.1e-71 271.6 256 60.5
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.8e-70 270.0 256 62.1
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.3e-70 269.6 256 61.3
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 7.5e-69 264.6 255 61.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.2e-66 257.3 257 59.5
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.2e-66 257.3 255 57.6
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 4.5e-66 255.4 257 59.1
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 4.5e-66 255.4 257 59.1
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 4.5e-66 255.4 255 56.9
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 1.3e-65 253.8 258 59.3
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 3.8e-65 252.3 260 59.2
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.1e-63 246.5 255 55.7
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.8e-62 243.4 255 57.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 3.0e-62 242.7 259 56.8
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 6.8e-62 241.5 258 56.2
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 6.8e-62 241.5 255 54.5
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 2.8e-60 236.1 258 54.7
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 4.1e-59 232.3 253 56.1
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 9.1e-59 231.1 259 53.7
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.2e-58 230.7 259 53.3
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.7e-58 229.6 256 52.3
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 3.5e-58 229.2 256 52.3
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.0e-57 227.6 259 52.5
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.0e-57 227.6 255 51.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.7e-57 226.9 254 52.8
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 3.8e-57 225.7 245 54.3
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 5.0e-57 225.3 258 51.9
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 6.5e-57 224.9 255 52.9
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.1e-56 224.2 254 51.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.2e-56 222.6 256 52.0
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 3.2e-56 222.6 262 51.1
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 3.2e-56 222.6 256 52.7
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.5e-56 221.9 252 53.2
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.2e-56 221.5 261 49.8
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 9.5e-56 221.1 252 52.0
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 9.5e-56 221.1 258 52.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 9.5e-56 221.1 258 52.3
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 9.5e-56 221.1 258 52.7
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 4.7e-55 218.8 258 52.3
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.0e-54 217.6 258 50.0
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.3e-54 216.5 261 51.7
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 3.0e-54 216.1 258 49.6
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 4.0e-54 215.7 243 52.7
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 4.0e-54 215.7 255 50.6
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 4.0e-54 215.7 256 52.3
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 4.0e-54 215.7 247 52.6
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 5.2e-54 215.3 256 49.6
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.2e-54 215.3 254 51.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 5.2e-54 215.3 261 50.2
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.2e-53 214.2 260 51.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.2e-53 214.2 245 53.1
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.5e-53 213.8 253 51.8
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.0e-53 213.4 258 47.7
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.4e-53 212.6 179 66.5
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 3.4e-53 212.6 249 51.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 4.4e-53 212.2 255 52.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 4.4e-53 212.2 263 49.8
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 5.7e-53 211.8 245 53.1
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 5.7e-53 211.8 260 48.5
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.3e-52 210.7 253 51.4
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.7e-52 210.3 253 51.4
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 2.2e-52 209.9 255 50.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.8e-52 209.5 247 51.8
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 2.8e-52 209.5 245 52.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.7e-52 209.1 241 51.9
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 1.1e-51 207.6 255 50.2
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.1e-51 207.6 245 51.4
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.8e-51 206.8 253 52.6
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.4e-51 205.3 253 51.8
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 7.0e-51 204.9 261 48.3
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 7.0e-51 204.9 258 49.2
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 2.7e-50 203.0 255 49.0
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 2.7e-50 203.0 255 49.0
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 5.9e-50 201.8 247 50.6
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 1.0e-49 201.1 252 52.0
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.1e-48 197.6 233 52.4
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 1.9e-48 196.8 264 48.9
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.5e-48 196.4 249 50.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.5e-48 196.4 243 50.6
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 7.3e-48 194.9 255 47.1
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 4.7e-47 192.2 241 50.2
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 3.0e-46 189.5 265 47.5
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.2e-45 187.6 252 46.8
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 7.5e-45 184.9 243 47.3
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 9.8e-45 184.5 126 76.2
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 2.9e-44 183.0 254 45.7
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 2.4e-43 179.9 255 45.5
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 7.0e-43 178.3 234 48.3
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 7.0e-43 178.3 247 47.4
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.7e-36 157.1 152 54.6
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 9.2e-35 151.4 123 64.2
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 5.6e-32 142.1 194 46.4
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 3.5e-26 122.9 193 40.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 2.8e-23 113.2 123 54.5
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 8.9e-22 108.2 249 35.3
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.7e-18 96.7 75 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.7e-17 94.0 146 41.8
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 5.1e-17 92.4 79 69.6
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.2e-15 87.8 235 34.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 9.9e-13 78.2 85 50.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.4e-11 74.3 138 39.9
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 4.2e-11 72.8 137 39.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.1e-10 70.5 154 36.4
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 2.3e-09 67.0 114 43.0
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 2.1e-07 60.5 58 55.2
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 3.1e-06 56.6 53 50.9
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 3.1e-06 56.6 65 49.2


User provided reference genes

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