Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 6.5e-236 820.5 450 100.0
BcaB01g01268 Brassica carinata HOM05D002078 ORTHO05D010191 4.3e-22 110.2 122 59.0
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.1e-16 91.3 61 72.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-16 90.5 61 70.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.5e-16 90.5 61 70.5
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.6e-16 90.1 61 72.1
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.9e-16 89.4 72 61.1
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 7.9e-16 89.4 61 72.1
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 5.1e-15 86.7 61 68.9
BcaC04g22521 Brassica carinata HOM05D002078 ORTHO05D010191 8.7e-15 85.9 104 51.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-14 85.1 61 68.9
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.5e-14 85.1 61 68.9
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.9e-14 84.7 61 67.2
BcaC02g10570 Brassica carinata HOM05D002078 ORTHO05D010191 1.9e-14 84.7 77 61.0
BcaC04g20301 Brassica carinata HOM05D002078 ORTHO05D010191 1.9e-14 84.7 78 60.3
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.5e-14 84.3 61 68.9
BcaC01g00653 Brassica carinata HOM05D002078 ORTHO05D010191 2.5e-14 84.3 77 61.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.3e-14 84.0 61 68.9
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 5.7e-14 83.2 55 74.5
BcaC04g19760 Brassica carinata HOM05D002078 ORTHO05D010191 5.7e-14 83.2 77 59.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 9.6e-14 82.4 61 65.6
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 9.6e-14 82.4 61 65.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 9.6e-14 82.4 61 65.6
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 9.6e-14 82.4 61 65.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 9.6e-14 82.4 61 65.6
BcaC05g26934 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-13 81.6 77 59.7
BcaC09g50419 Brassica carinata HOM05D002078 ORTHO05D010191 2.1e-13 81.3 77 59.7
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.8e-13 80.9 62 66.1
BcaC06g35883 Brassica carinata HOM05D002078 ORTHO05D005680 3.7e-13 80.5 78 57.7
BcaC04g22188 Brassica carinata HOM05D002078 ORTHO05D010191 4.8e-13 80.1 84 57.1
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 8.2e-13 79.3 61 65.6
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 8.2e-13 79.3 61 65.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 8.2e-13 79.3 61 62.3
BcaC03g14713 Brassica carinata HOM05D002078 ORTHO05D010191 1.1e-12 79.0 77 54.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-12 79.0 61 63.9
BcaC03g17136 Brassica carinata HOM05D002078 ORTHO05D005680 1.8e-12 78.2 77 58.4
BcaC05g27558 Brassica carinata HOM05D002078 ORTHO05D010191 1.8e-12 78.2 77 57.1
BcaC04g20475 Brassica carinata HOM05D002078 ORTHO05D010191 2.4e-12 77.8 127 45.7
BcaC03g17328 Brassica carinata HOM05D002078 ORTHO05D005680 3.1e-12 77.4 77 53.2
BcaC04g20590 Brassica carinata HOM05D002078 ORTHO05D010191 9.0e-12 75.9 79 54.4
BcaC04g21071 Brassica carinata HOM05D002078 ORTHO05D010191 9.0e-12 75.9 77 53.2
BcaC05g27780 Brassica carinata HOM05D002078 ORTHO05D010191 1.5e-11 75.1 77 51.9
BcaC01g01658 Brassica carinata HOM05D002078 ORTHO05D010191 4.5e-11 73.6 77 53.2
BcaC05g26570 Brassica carinata HOM05D002078 ORTHO05D010191 4.5e-11 73.6 77 51.9
BcaC08g43499 Brassica carinata HOM05D002078 ORTHO05D010191 7.6e-11 72.8 79 57.0
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 7.6e-11 72.8 51 62.7
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.7e-10 71.6 59 57.6
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.2e-10 71.2 61 57.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.9e-10 70.9 49 65.3
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.8e-10 70.5 55 60.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.8e-10 70.5 55 60.0
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.8e-10 70.5 49 63.3
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.8e-10 70.5 49 63.3
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 5.0e-10 70.1 60 60.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-10 70.1 49 65.3
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-10 70.1 49 65.3
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 5.0e-10 70.1 56 58.9
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 6.5e-10 69.7 51 60.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 6.5e-10 69.7 51 60.8
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.5e-10 69.7 55 60.0
BcaC01g02903 Brassica carinata HOM05D002078 ORTHO05D010191 8.4e-10 69.3 101 43.6
BcaC04g23232 Brassica carinata HOM05D002078 ORTHO05D010191 8.4e-10 69.3 65 58.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 8.4e-10 69.3 68 50.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 8.4e-10 69.3 50 64.0
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 8.4e-10 69.3 50 64.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 8.4e-10 69.3 47 68.1
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 8.4e-10 69.3 65 50.8
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.1e-09 68.9 47 68.1
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.1e-09 68.9 47 66.0
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.4e-09 68.6 47 66.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.9e-09 68.2 47 63.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.9e-09 68.2 65 47.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.5e-09 67.8 51 60.8
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 2.5e-09 67.8 55 56.4
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.5e-09 67.8 49 63.3
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.2e-09 67.4 51 60.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 3.2e-09 67.4 51 60.8
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.2e-09 67.4 50 62.0
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.2e-09 67.4 50 62.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.2e-09 67.4 50 62.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 4.2e-09 67.0 51 58.8
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 4.2e-09 67.0 47 63.8
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.2e-09 67.0 51 62.7
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.2e-09 67.0 51 58.8
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 4.2e-09 67.0 65 49.2
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 5.5e-09 66.6 47 66.0
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.5e-09 66.6 47 66.0
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.5e-09 66.6 51 60.8
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 7.1e-09 66.2 51 62.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 7.1e-09 66.2 50 62.0
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 7.1e-09 66.2 55 58.2
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.1e-09 66.2 65 47.7
BcaB01g00897 Brassica carinata HOM05D001424 ORTHO05D001315 9.3e-09 65.9 42 85.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.3e-09 65.9 47 66.0
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.3e-09 65.9 47 66.0
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.2e-08 65.5 55 56.4
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.2e-08 65.5 55 56.4
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.2e-08 65.5 55 56.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.2e-08 65.5 47 59.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-08 65.5 47 63.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.2e-08 65.5 47 63.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.2e-08 65.5 51 58.8
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.2e-08 65.5 65 50.8
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.2e-08 65.5 51 60.8
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.2e-08 65.5 64 50.0
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.6e-08 65.1 65 47.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-08 65.1 60 56.7
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-08 65.1 60 56.7
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-08 65.1 44 68.2
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.6e-08 65.1 51 52.9
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.1e-08 64.7 47 63.8
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 2.1e-08 64.7 51 60.8
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.1e-08 64.7 47 63.8
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.1e-08 64.7 50 56.0
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.7e-08 64.3 51 58.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.7e-08 64.3 51 58.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 2.7e-08 64.3 47 61.7
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.7e-08 64.3 51 58.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.7e-08 64.3 51 58.8
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.5e-08 63.9 51 58.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.5e-08 63.9 51 60.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 4.6e-08 63.5 51 58.8
BcaC03g14208 Brassica carinata HOM05D002078 ORTHO05D005680 4.6e-08 63.5 62 59.7
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.6e-08 63.5 51 60.8
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 4.6e-08 63.5 47 59.6
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 4.6e-08 63.5 51 58.8
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 4.6e-08 63.5 47 66.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.1e-08 63.2 55 54.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.1e-08 63.2 65 46.2
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.1e-08 63.2 47 59.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 7.9e-08 62.8 63 47.6
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 7.9e-08 62.8 47 61.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 7.9e-08 62.8 50 60.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 7.9e-08 62.8 50 60.0
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 7.9e-08 62.8 50 60.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 7.9e-08 62.8 50 54.0
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.0e-07 62.4 47 63.8
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.0e-07 62.4 65 44.6
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.0e-07 62.4 51 58.8
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.0e-07 62.4 51 56.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-07 62.0 47 55.3
BcaB07g33168 Brassica carinata HOM05D002078 ORTHO05D091093 1.8e-07 61.6 112 44.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.8e-07 61.6 55 50.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.8e-07 61.6 47 61.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.8e-07 61.6 51 58.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-07 61.2 51 54.9
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.0e-07 60.8 55 49.1
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 3.0e-07 60.8 57 47.4
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.9e-07 60.5 65 46.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.9e-07 60.5 47 57.4
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.9e-07 60.5 51 56.9
BcaC05g27299 Brassica carinata HOM05D002078 ORTHO05D010191 5.1e-07 60.1 77 46.8
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 5.1e-07 60.1 64 51.6
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.1e-07 60.1 51 54.9
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 5.1e-07 60.1 64 51.6
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.1e-06 58.9 53 52.8
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.5e-06 57.8 64 45.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.5e-06 57.8 47 57.4
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.3e-06 57.4 47 57.4
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.3e-06 57.4 52 46.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.3e-06 57.4 53 50.9
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.3e-06 57.4 51 54.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.3e-06 57.0 47 57.4
BcaB08g35583 Brassica carinata HOM05D001424 ORTHO05D001315 4.3e-06 57.0 52 69.2
BcaC01g02154 Brassica carinata HOM05D002078 ORTHO05D010191 5.7e-06 56.6 73 42.5
BcaC04g21351 Brassica carinata HOM05D002078 ORTHO05D005680 7.4e-06 56.2 77 46.8
BcaC05g28690 Brassica carinata HOM05D002078 ORTHO05D005680 9.7e-06 55.8 77 49.4


User provided reference genes

Program Settings