Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 2.6e-155 552.0 273 100.0
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 1.9e-142 509.2 273 93.4
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 4.3e-142 508.1 274 94.5
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 2.8e-141 505.4 274 94.2
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 2.2e-138 495.7 273 90.8
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 5.5e-137 491.1 274 90.1
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 1.3e-135 486.5 278 89.6
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 8.2e-133 477.2 276 87.3
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 8.2e-133 477.2 276 87.3
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 4.0e-132 474.9 273 89.0
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 3.4e-131 471.9 278 87.1
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 7.6e-131 470.7 278 85.3
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 3.5e-128 461.8 278 84.9
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 1.3e-127 459.9 275 85.1
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 2.0e-123 446.0 270 83.7
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 4.5e-115 418.3 278 75.9
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.9e-105 386.3 266 73.7
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 1.8e-103 379.8 255 73.7
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 5.2e-103 378.3 253 75.1
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 5.2e-103 378.3 257 72.8
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 9.7e-102 374.0 259 72.2
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 1.7e-101 373.2 257 73.9
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 2.2e-101 372.9 243 76.1
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 6.3e-101 371.3 253 73.9
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 1.1e-100 370.5 259 71.8
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 1.8e-100 369.8 260 71.5
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 2.4e-100 369.4 254 71.7
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 5.3e-100 368.2 257 70.8
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 7.7e-99 364.4 257 69.6
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.0e-98 364.0 255 72.2
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.3e-98 363.6 253 71.9
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 1.7e-98 363.2 262 71.4
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 5.0e-98 361.7 261 70.1
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 8.5e-98 360.9 254 72.0
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 8.5e-98 360.9 254 70.9
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 1.1e-97 360.5 238 74.4
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 1.1e-97 360.5 257 71.2
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.1e-97 360.5 255 72.2
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 1.5e-97 360.1 259 68.7
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 1.5e-97 360.1 257 71.2
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 2.5e-97 359.4 232 76.3
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 3.2e-97 359.0 259 71.4
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 3.2e-97 359.0 254 71.3
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 4.2e-97 358.6 235 75.3
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 7.2e-97 357.8 251 71.7
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 9.4e-97 357.5 256 70.3
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 9.4e-97 357.5 260 68.8
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 1.2e-96 357.1 256 70.7
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 1.2e-96 357.1 257 69.6
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 1.6e-96 356.7 249 72.3
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 1.6e-96 356.7 245 73.1
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 2.1e-96 356.3 264 67.4
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.7e-96 355.9 253 71.1
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 2.7e-96 355.9 257 69.6
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 3.6e-96 355.5 257 67.7
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 4.7e-96 355.1 264 66.3
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 6.1e-96 354.8 257 68.1
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 8.0e-96 354.4 276 64.5
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 1.4e-95 353.6 257 69.3
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.0e-95 352.1 268 67.2
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 5.2e-95 351.7 256 69.5
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 1.2e-94 350.5 261 66.7
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 1.2e-94 350.5 269 66.9
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 1.2e-94 350.5 269 66.9
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.0e-94 349.7 282 63.8
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 2.6e-94 349.4 261 66.3
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 2.6e-94 349.4 282 65.2
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 2.6e-94 349.4 258 68.2
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 3.3e-94 349.0 241 73.0
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 5.7e-94 348.2 256 70.3
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 5.7e-94 348.2 257 68.5
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 9.7e-94 347.4 240 70.8
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 9.7e-94 347.4 242 71.5
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 1.7e-93 346.7 281 64.4
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 2.8e-93 345.9 257 68.1
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 3.7e-93 345.5 254 68.1
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 8.3e-93 344.4 270 66.7
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 3.1e-92 342.4 263 66.9
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 7.0e-92 341.3 255 67.1
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 1.6e-91 340.1 256 68.8
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 2.0e-91 339.7 241 69.7
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 1.7e-90 336.7 237 69.6
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 2.9e-90 335.9 242 65.7
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 1.9e-89 333.2 218 74.8
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 3.2e-89 332.4 238 69.3
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 1.2e-88 330.5 256 66.0
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 3.6e-88 328.9 237 66.2
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 4.7e-88 328.6 322 55.3
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 1.4e-87 327.0 221 72.4
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 3.0e-87 325.9 220 70.9
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 4.0e-87 325.5 259 63.3
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 8.8e-87 324.3 310 56.5
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 1.2e-86 323.9 221 72.4
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 7.5e-86 321.2 218 72.0
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 4.8e-85 318.5 234 69.7
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 8.3e-85 317.8 219 71.7
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 1.1e-84 317.4 221 71.9
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 2.9e-82 309.3 231 66.2
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.4e-79 300.4 209 72.7
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 6.8e-79 298.1 211 69.7
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 2.8e-72 276.2 207 65.2
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 8.0e-72 274.6 146 95.2
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 2.6e-70 269.6 314 51.9
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 4.4e-70 268.9 147 94.6
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 5.8e-70 268.5 233 59.2
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 2.2e-69 266.5 147 93.9
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 6.0e-67 258.5 184 72.8
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 5.6e-65 251.9 237 51.5
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 7.3e-65 251.5 176 73.3
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 3.4e-62 242.7 243 51.0
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 1.1e-60 237.7 240 51.7
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 7.1e-60 235.0 151 72.2
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 9.5e-57 224.6 126 89.7
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 1.1e-52 211.1 241 46.5
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 1.9e-49 200.3 143 72.0
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 3.6e-48 196.1 104 97.1
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.2e-47 192.2 146 65.1
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.2e-43 181.0 189 54.0
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.6e-40 170.6 111 70.3
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 1.2e-38 164.5 124 69.4
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 3.5e-35 152.9 96 79.2
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 9.0e-31 138.3 95 72.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 5.3e-23 112.5 92 57.6
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.1e-19 100.5 115 52.2
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 8.7e-18 95.1 124 49.2
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 3.3e-17 93.2 124 49.2
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 2.1e-16 90.5 254 29.9
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 1.8e-15 87.4 47 83.0
BolC4t25378H Brassica oleracea HOM05D005955 ORTHO05D007633 2.3e-10 70.5 49 79.6


User provided reference genes

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