Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 7.1e-220 768.1 607 100.0
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 8.8e-170 601.7 624 84.8
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.7e-166 590.1 625 77.0
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 7.7e-166 588.6 620 85.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 5.0e-165 585.9 625 72.5
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.1e-163 580.5 623 76.4
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.6e-121 440.7 624 70.2
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.1e-118 431.0 619 69.6
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.5e-118 430.3 623 69.5
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 6.2e-99 366.3 331 64.4
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 5.1e-93 346.7 625 63.4
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.2e-78 298.9 633 60.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.2e-78 298.9 633 60.8
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 6.3e-67 260.0 620 56.5
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.1e-63 249.2 179 76.5
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.4e-61 242.3 632 57.6
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 8.5e-56 223.0 627 57.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.5e-47 193.7 341 37.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.1e-46 191.8 255 45.9
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.3e-43 182.6 256 43.0
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 7.0e-42 176.8 449 46.8
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 7.2e-39 166.8 255 38.8
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.1e-38 165.2 439 43.5
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.4e-37 162.5 271 39.1
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 7.5e-36 156.8 480 39.6
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-34 152.9 212 42.9
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.8e-34 152.1 217 41.9
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 2.0e-33 148.7 309 34.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 3.8e-32 144.4 255 36.5
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.9e-31 142.1 225 38.7
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 2.5e-31 141.7 293 33.4
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 5.6e-31 140.6 481 45.3
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.2e-30 139.4 321 33.3
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 2.8e-30 138.3 208 37.5
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 3.6e-30 137.9 184 42.9
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 4.1e-26 124.4 229 38.4
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.2e-25 122.9 243 35.0
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.3e-24 119.4 211 35.5
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.3e-24 118.6 244 32.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.1e-23 116.3 334 29.3
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 2.5e-23 115.2 180 40.6
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 2.5e-23 115.2 188 39.9
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 3.3e-23 114.8 217 40.6
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.3e-23 114.8 217 35.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 9.5e-23 113.2 160 40.6
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.6e-22 111.3 134 45.5
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.6e-22 111.3 261 29.9
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.0e-22 110.2 298 31.2
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.4e-21 109.4 166 35.5
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.8e-21 109.0 178 34.3
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.8e-21 109.0 190 38.4
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 2.3e-21 108.6 263 31.2
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.5e-20 105.9 128 48.4
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.5e-20 105.9 183 38.3
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 3.4e-20 104.8 132 42.4
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 4.4e-20 104.4 117 56.4
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 5.8e-20 104.0 180 36.7
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.5e-20 103.6 183 37.7
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 9.8e-20 103.2 190 35.8
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.7e-19 101.3 179 36.3
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 8.3e-19 100.1 167 34.1
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 1.4e-18 99.4 193 37.8
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.9e-18 99.0 179 36.3
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 3.2e-18 98.2 166 33.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 9.2e-18 96.7 182 36.3
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.7e-17 95.1 129 41.9
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.7e-17 95.1 115 48.7
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 2.7e-17 95.1 289 26.3
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.0e-16 93.2 196 32.7
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 1.0e-16 93.2 134 41.8
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.3e-16 92.8 175 34.9
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.3e-16 92.0 430 39.5
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 2.3e-16 92.0 132 39.4
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 5.0e-16 90.9 132 37.9
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 5.0e-16 90.9 264 28.4
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 6.6e-16 90.5 405 44.7
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 6.6e-16 90.5 209 33.0
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 8.6e-16 90.1 152 38.2
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 8.6e-16 90.1 152 38.2
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 8.6e-16 90.1 141 41.1
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 1.1e-15 89.7 165 38.2
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.1e-15 89.7 140 37.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 1.5e-15 89.4 125 38.4
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 3.3e-15 88.2 224 33.5
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 4.3e-15 87.8 179 35.8
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 9.5e-15 86.7 123 39.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 1.6e-14 85.9 222 29.7
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.1e-14 85.5 118 40.7
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 4.7e-14 84.3 42 88.1
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 6.2e-14 84.0 209 30.6
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.1e-13 83.2 250 30.0
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-13 82.8 260 27.3
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 8.9e-13 80.1 213 31.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 1.2e-12 79.7 139 36.7
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 5.8e-12 77.4 251 28.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 9.9e-12 76.6 205 31.2
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 9.9e-12 76.6 245 26.1
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.7e-11 75.9 105 45.7
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.9e-11 75.1 135 34.8
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 2.9e-11 75.1 140 33.6
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 2.9e-11 75.1 113 39.8
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 3.7e-11 74.7 214 28.5
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 1.4e-10 72.8 89 47.2
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 1.9e-10 72.4 117 40.2
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 3.2e-10 71.6 196 30.1
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 4.1e-10 71.2 227 27.8
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 4.1e-10 71.2 270 26.7
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 7.1e-10 70.5 138 34.1
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 9.2e-10 70.1 169 30.8
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.2e-09 69.7 193 29.5
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 2.1e-09 68.9 222 27.5
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 7.8e-09 67.0 239 26.4
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 1.0e-08 66.6 159 30.2
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.3e-08 66.2 182 30.8
RcHm_v2.0_Chr7g0177611 Rosa chinensis HOM05D007145 ORTHO05D008952 3.9e-08 64.7 259 26.3
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 6.6e-08 63.9 139 29.5
HanXRQChr13g0394161 Helianthus annuus HOM05D007145 ORTHO05D008952 1.5e-07 62.8 296 23.6
Oeu034452.1 Olea europaea HOM05D007145 ORTHO05D008952 1.5e-07 62.8 261 23.8
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-07 62.4 233 30.0
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 2.5e-07 62.0 164 28.7
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 4.3e-07 61.2 129 33.3
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 5.6e-07 60.8 204 25.5
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 5.6e-07 60.8 266 27.1
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 9.5e-07 60.1 187 28.9
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.2e-06 59.7 272 24.3
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.2e-06 59.7 266 24.4
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 1.6e-06 59.3 249 23.7
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.1e-06 58.9 240 24.6
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 2.8e-06 58.5 181 24.9
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 3.6e-06 58.2 271 23.6
AUR62040041 Chenopodium quinoa HOM05D007145 ORTHO05D008952 3.6e-06 58.2 259 25.5
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 4.7e-06 57.8 271 23.2
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.2e-06 57.4 86 36.0
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 8.1e-06 57.0 204 27.9


User provided reference genes

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