Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.329 Acer truncatum HOM05D005989 ORTHO05D000022 3.4e-64 248.1 117 100.0
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-59 231.1 116 92.2
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 2.2e-58 228.8 116 91.4
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-58 228.0 116 91.4
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 2.0e-56 222.2 116 89.7
Atru.chr3.1839 Acer truncatum HOM05D005989 ORTHO05D000022 2.2e-50 202.2 116 81.9
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 1.4e-49 199.5 116 82.8
Atru.chr3.1667 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-41 171.4 89 87.6
Atru.chr8.108 Acer truncatum HOM05D000003 ORTHO05D000022 4.1e-41 171.4 116 67.2
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 2.7e-40 168.7 86 93.0
Atru.chr4.578 Acer truncatum HOM05D000003 ORTHO05D000651 1.9e-38 162.5 82 90.2
Atru.chr12.2056 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-38 161.4 84 85.7
Atru.chr13.2205 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-37 159.8 84 88.1
Atru.chr3.1941 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-36 156.8 81 87.7
Atru.chr8.1018 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-36 153.7 81 87.7
Atru.chr9.202 Acer truncatum HOM05D000003 ORTHO05D000022 3.7e-34 148.3 81 84.0
Atru.chr4.575 Acer truncatum HOM05D000003 ORTHO05D000651 8.3e-34 147.1 77 87.0
Atru.chr9.173 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-30 136.0 77 81.8
Atru.chr8.558 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-29 132.9 116 59.5
Atru.chr2.1420 Acer truncatum HOM05D000003 ORTHO05D000022 2.2e-26 122.5 64 84.4
Atru.chr1.2293 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-23 112.8 56 87.5
Atru.chr9.279 Acer truncatum HOM05D000003 ORTHO05D000022 1.7e-23 112.8 56 87.5
Atru.chr12.1901 Acer truncatum HOM05D000003 ORTHO05D000022 5.0e-23 111.3 76 65.8
TPR.G3914 Trifolium pratense HOM05D005989 ORTHO05D000022 1.1e-20 103.6 114 43.0
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 1.8e-20 102.8 112 42.9
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 8.9e-20 100.5 111 41.4
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 1.7e-18 96.3 112 42.0
Atru.chr3.2367 Acer truncatum HOM05D000003 ORTHO05D000022 2.9e-18 95.5 77 55.8
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-18 95.5 120 41.7
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 4.9e-18 94.7 112 40.2
FvH4_3g24991 Fragaria vesca HOM05D005989 ORTHO05D000022 6.4e-18 94.4 111 42.3
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 6.4e-18 94.4 112 40.2
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 6.4e-18 94.4 120 41.7
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 8.3e-18 94.0 112 41.1
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 8.3e-18 94.0 112 40.2
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 8.3e-18 94.0 120 41.7
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 8.3e-18 94.0 120 41.7
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 1.1e-17 93.6 112 42.0
Atru.chr11.245 Acer truncatum HOM05D005989 ORTHO05D000022 2.4e-17 92.4 80 50.0
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 2.4e-17 92.4 112 42.0
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 4.1e-17 91.7 112 39.3
TPR.G15449 Trifolium pratense HOM05D005989 ORTHO05D000022 5.4e-17 91.3 111 41.4
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 7.0e-17 90.9 112 39.3
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 7.0e-17 90.9 106 41.5
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 7.0e-17 90.9 112 39.3
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 7.0e-17 90.9 110 40.0
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 1.2e-16 90.1 112 40.2
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 2.1e-16 89.4 106 43.4
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 3.5e-16 88.6 112 36.6
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 3.5e-16 88.6 108 39.8
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 6.0e-16 87.8 114 40.4
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 7.8e-16 87.4 105 41.9
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 1.0e-15 87.0 108 39.8
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 1.3e-15 86.7 112 35.7
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 1.7e-15 86.3 110 38.2
RcHm_v2.0_Chr6g0253181 Rosa chinensis HOM05D005989 ORTHO05D000022 1.7e-15 86.3 91 40.7
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 2.3e-15 85.9 106 39.6
Atru.chr7.152 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-15 85.5 49 77.6
FvH4_7g14701 Fragaria vesca HOM05D000021 ORTHO05D000010 3.9e-15 85.1 109 38.5
Psat1g101960 Pisum sativum HOM05D000003 ORTHO05D000007 3.9e-15 85.1 112 39.3
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 3.9e-15 85.1 112 35.7
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 5.1e-15 84.7 114 38.6
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 1.5e-14 83.2 110 37.3
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 1.9e-14 82.8 112 33.9
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 2.5e-14 82.4 95 42.1
Atru.chr7.890 Acer truncatum HOM05D005989 ORTHO05D000022 3.3e-14 82.0 112 38.4
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 4.3e-14 81.6 103 37.9
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 9.5e-14 80.5 112 38.4
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 1.2e-13 80.1 112 38.4
RcHm_v2.0_Chr3g0451531 Rosa chinensis HOM05D005989 ORTHO05D000022 1.2e-13 80.1 94 40.4
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 1.6e-13 79.7 113 37.2
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 2.8e-13 79.0 113 37.2
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 2.8e-13 79.0 71 49.3
Psat2g155160 Pisum sativum HOM05D005989 ORTHO05D000022 3.6e-13 78.6 105 38.1
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 3.6e-13 78.6 79 44.3
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 4.7e-13 78.2 69 50.7
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 6.2e-13 77.8 71 49.3
Aqoxy3G01937 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.4e-12 76.6 115 33.9
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 1.8e-12 76.3 120 36.7
TPR.G37438 Trifolium pratense HOM05D005989 ORTHO05D000022 2.3e-12 75.9 93 34.4
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 5.2e-12 74.7 71 49.3
RcHm_v2.0_Chr6g0299951 Rosa chinensis HOM05D005989 ORTHO05D000022 6.8e-12 74.3 109 37.6
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 2.6e-11 72.4 115 35.7
TPR.G16745 Trifolium pratense HOM05D005989 ORTHO05D000022 2.6e-11 72.4 88 34.1
Atru.chr1.3183 Acer truncatum HOM05D000003 ORTHO05D000022 3.4e-11 72.0 103 35.0
Aqoxy2G02234 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.4e-11 72.0 114 36.8
MD05G1244100 Malus domestica HOM05D005989 ORTHO05D000022 3.4e-11 72.0 114 34.2
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 1.3e-10 70.1 105 35.2
TPR.G23861 Trifolium pratense HOM05D005989 ORTHO05D000022 1.7e-10 69.7 106 34.0
Sopen00g003390 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-10 69.3 116 38.8
RcHm_v2.0_Chr5g0016091 Rosa chinensis HOM05D005989 ORTHO05D020750 2.9e-10 68.9 69 43.5
Aqoxy5G02871 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.7e-10 68.6 114 35.1
Sopen08g015460 Solanum pennellii HOM05D000155 ORTHO05D000022 3.7e-10 68.6 116 38.8
Atru.chr7.328 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-10 68.2 39 79.5
RcHm_v2.0_Chr1g0361641 Rosa chinensis HOM05D013124 ORTHO05D011902 8.3e-10 67.4 84 38.1
RcHm_v2.0_Chr1g0357231 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-09 66.6 92 34.8
CiPaw.04G193300 Carya illinoinensis HOM05D000053 ORTHO05D000035 3.2e-09 65.5 115 35.7
Cc11_g02100 Coffea canephora HOM05D000003 ORTHO05D000022 3.2e-09 65.5 114 32.5
RcHm_v2.0_Chr7g0206171 Rosa chinensis HOM05D005989 ORTHO05D000022 5.4e-09 64.7 108 34.3
TPR.G40388 Trifolium pratense HOM05D005989 ORTHO05D000022 5.4e-09 64.7 97 38.1
FvH4_5g27541 Fragaria vesca HOM05D005989 ORTHO05D000022 9.2e-09 63.9 94 36.2
Sopen11g007870 Solanum pennellii HOM05D000155 ORTHO05D000007 9.2e-09 63.9 115 37.4
MSTRG.28030 Avicennia marina HOM05D000155 ORTHO05D000022 1.2e-08 63.5 121 32.2
PSO017G1893 Papaver somniferum HOM05D005989 ORTHO05D000022 1.2e-08 63.5 112 34.8
Aqoxy1G03064 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.6e-08 63.2 96 34.4
PSO411G0002 Papaver somniferum HOM05D000003 ORTHO05D000651 1.6e-08 63.2 115 33.9
PSO731G0055 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-08 63.2 113 31.0
PSO832G1270 Papaver somniferum HOM05D000003 ORTHO05D000651 2.1e-08 62.8 115 33.9
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 2.7e-08 62.4 81 38.3
PSO832G2196 Papaver somniferum HOM05D000003 ORTHO05D000651 2.7e-08 62.4 115 33.9
Sopen00g003380 Solanum pennellii HOM05D000155 ORTHO05D000022 2.7e-08 62.4 116 36.2
Sopen00g003540 Solanum pennellii HOM05D000003 ORTHO05D000004 2.7e-08 62.4 116 36.2
MBI03_g01399_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.5e-08 62.0 105 39.0
FAN09G3243 Fragaria x ananassa HOM05D005989 ORTHO05D011902 6.0e-08 61.2 56 55.4
Aqoxy4G00597 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.8e-08 60.8 114 34.2
Lalb_Chr18g0052711 Lupinus albus HOM05D005989 ORTHO05D000022 7.8e-08 60.8 80 37.5
PGSC0003DMG400029909 Solanum tuberosum HOM05D000024 ORTHO05D000022 7.8e-08 60.8 116 35.3
Sopen08g024310 Solanum pennellii HOM05D000003 ORTHO05D000006 1.0e-07 60.5 115 35.7
Sopen11g008100 Solanum pennellii HOM05D000003 ORTHO05D000004 1.0e-07 60.5 117 37.6
MBI16_g11026_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-07 60.1 114 33.3
Medtr8g470880 Medicago truncatula HOM05D000003 ORTHO05D000006 1.7e-07 59.7 108 35.2
Aqoxy3G02424 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.3e-07 59.3 100 37.0
Nitab4.5_0008823g0030 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.3e-07 59.3 116 31.9
PSO384G3751 Papaver somniferum HOM05D000003 ORTHO05D000651 2.3e-07 59.3 115 33.0
PSO541G4618 Papaver somniferum HOM05D000003 ORTHO05D000651 2.3e-07 59.3 113 31.0
Aqoxy2G01515 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.0e-07 58.9 115 31.3
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 3.0e-07 58.9 113 32.7
Aqoxy3G01190 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.9e-07 58.5 115 31.3
Aqoxy3G01495 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.9e-07 58.5 115 32.2
Lalb_Chr02g0160271 Lupinus albus HOM05D005989 ORTHO05D000022 3.9e-07 58.5 68 41.2
Atru.chr2.311 Acer truncatum HOM05D000003 ORTHO05D000022 5.1e-07 58.2 35 68.6
Aqoxy3G01934 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 5.1e-07 58.2 69 36.2
FAN01G2791 Fragaria x ananassa HOM05D005989 ORTHO05D017036 5.1e-07 58.2 83 38.6
FAN24G3501 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.1e-07 58.2 100 37.0
Lalb_Chr23g0276181 Lupinus albus HOM05D005989 ORTHO05D000022 5.1e-07 58.2 92 37.0
PGSC0003DMG400041332 Solanum tuberosum HOM05D000155 ORTHO05D000022 5.1e-07 58.2 108 35.2
Aqoxy4G01597 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 6.6e-07 57.8 115 31.3
PSO675G4652 Papaver somniferum HOM05D000003 ORTHO05D000651 6.6e-07 57.8 114 32.5
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 6.6e-07 57.8 86 34.9
Aqoxy1G02456 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.1e-06 57.0 115 28.7
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.1e-06 57.0 115 31.3
Sopen01g026920 Solanum pennellii HOM05D000003 ORTHO05D000022 1.1e-06 57.0 115 34.8
Sopen06g012050 Solanum pennellii HOM05D000155 ORTHO05D000022 1.1e-06 57.0 117 34.2
Lalb_Chr07g0188801 Lupinus albus HOM05D005989 ORTHO05D000022 1.5e-06 56.6 105 34.3
Nitab4.5_0000335g0250 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.5e-06 56.6 112 31.2
PSO073G0006 Papaver somniferum HOM05D000003 ORTHO05D000651 1.5e-06 56.6 113 31.9
PSO478G5256 Papaver somniferum HOM05D000003 ORTHO05D000651 1.5e-06 56.6 113 27.4
Sopen03g012440 Solanum pennellii HOM05D000004 ORTHO05D000022 1.5e-06 56.6 117 32.5
PGSC0003DMG400039694 Solanum tuberosum HOM05D000155 ORTHO05D000022 1.5e-06 56.6 118 32.2
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 1.5e-06 56.6 110 30.9
Sopen02g011140 Solanum pennellii HOM05D000044 ORTHO05D002860 1.9e-06 56.2 110 36.4
Aqoxy6G02758 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.5e-06 55.8 115 29.6
MBI13_g20633_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.5e-06 55.8 114 36.0
Aqoxy4G01322 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.3e-06 55.5 114 29.8
Sopen00g001090 Solanum pennellii HOM05D000003 ORTHO05D000004 3.3e-06 55.5 115 35.7
Sopen05g017850 Solanum pennellii HOM05D000155 ORTHO05D000022 3.3e-06 55.5 115 33.9
Atru.chr5.433 Acer truncatum HOM05D005989 ORTHO05D000022 4.3e-06 55.1 72 34.7
Sopen03g011360 Solanum pennellii HOM05D000155 ORTHO05D000022 4.3e-06 55.1 117 32.5
MBI06_g07357_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.6e-06 54.7 118 35.6
PSO478G2207 Papaver somniferum HOM05D000003 ORTHO05D000651 5.6e-06 54.7 112 29.5
PGSC0003DMG400035792 Solanum tuberosum HOM05D000155 ORTHO05D000022 5.6e-06 54.7 117 34.2
Nitab4.5_0000009g0390 Nicotiana tabacum HOM05D000155 ORTHO05D000022 7.3e-06 54.3 107 31.8
PSO111G0053 Papaver somniferum HOM05D000003 ORTHO05D000651 7.3e-06 54.3 113 27.4
PSO713G0010 Papaver somniferum HOM05D000003 ORTHO05D000651 7.3e-06 54.3 113 31.0
Sabra06G0000400 Salix brachista HOM05D000003 ORTHO05D000004 7.3e-06 54.3 112 30.4
Sopen06g003730 Solanum pennellii HOM05D000155 ORTHO05D000022 7.3e-06 54.3 117 33.3
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 9.5e-06 53.9 113 33.6
Peaxi162Scf00002g00074 Petunia axillaris HOM05D000155 ORTHO05D000022 9.5e-06 53.9 109 31.2


User provided reference genes

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