Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1527.7 773 100.0
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1347.8 776 87.8
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1226.1 776 80.0
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1223.8 737 84.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1218.4 776 79.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1216.8 776 79.4
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1216.1 779 79.6
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1216.1 770 81.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1206.4 738 83.1
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1206.4 783 79.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1205.3 780 79.9
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1204.1 782 78.9
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1199.5 768 80.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 773 78.7
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1194.5 753 81.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1194.1 774 79.6
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1193.7 748 80.6
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1192.2 788 78.8
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1191.8 768 79.2
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1190.6 736 81.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1188.7 781 78.9
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1187.6 757 80.1
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1187.2 783 78.8
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1183.7 784 77.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1181.8 732 81.4
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1179.1 710 83.9
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1177.2 761 79.6
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1174.8 781 78.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1167.5 739 79.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 783 77.0
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1164.8 783 77.0
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1161.7 781 76.3
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1158.7 783 76.2
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1156.4 743 79.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1151.7 786 75.8
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1148.3 782 75.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 779 77.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1145.2 782 75.6
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1143.6 750 77.5
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1140.6 825 73.6
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 763 76.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1136.3 754 76.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 761 76.2
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1130.5 783 75.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1126.7 764 75.7
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1124.4 787 73.8
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1123.6 765 74.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1121.7 708 79.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 726 79.1
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 825 71.8
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 776 74.7
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1101.3 708 78.5
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1096.3 775 74.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1096.3 770 73.8
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1095.9 775 72.0
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 775 74.7
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 766 74.3
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1089.3 790 72.2
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 759 74.8
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1088.6 766 74.2
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1088.6 766 74.2
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1086.6 736 75.1
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1084.3 694 79.4
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 738 75.1
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.1e-311 1073.2 728 76.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 7.9e-311 1070.1 758 73.6
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.1e-310 1068.1 741 75.0
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.2e-309 1066.2 759 73.5
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 3.4e-309 1064.7 755 73.4
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.2e-308 1062.0 766 71.9
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.7e-308 1061.2 763 73.1
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 3.7e-308 1061.2 772 71.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 3.7e-308 1061.2 742 74.1
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 6.4e-308 1060.4 736 74.7
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 834 67.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.7e-305 1052.4 773 72.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 660 80.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 772 70.7
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.3e-304 1048.1 748 74.7
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 7.3e-304 1047.0 795 69.9
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 769 71.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 4.7e-303 1044.3 773 70.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.8e-302 1042.3 786 69.6
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 6.8e-302 1040.4 772 70.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 1.5e-301 1039.3 763 71.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 763 70.9
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 678 78.5
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.2e-300 1035.4 763 70.8
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 2.9e-300 1035.0 784 68.5
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 6.4e-300 1033.9 763 70.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 8.4e-300 1033.5 781 69.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 733 70.3
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.4e-291 1005.4 737 69.3
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 709 74.0
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 778 67.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.1e-283 979.9 717 70.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.2e-258 896.7 606 78.9
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 9.4e-251 870.5 541 79.5
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.7e-250 868.2 541 79.1
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.6e-242 842.0 730 59.5
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.7e-239 832.0 722 61.1
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 4.5e-237 825.1 753 58.3
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.3e-233 812.8 737 57.8
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.2e-232 810.4 728 60.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-226 790.0 541 69.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 6.1e-218 761.5 531 68.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 2.0e-213 746.5 529 67.3
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 4.7e-202 708.8 541 64.3
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-193 681.0 414 80.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 2.4e-177 626.7 403 78.7
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.4e-169 600.9 414 68.8
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.6e-154 550.8 343 80.2
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.3e-131 473.4 269 84.0
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.8e-105 387.9 689 36.4
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 9.5e-102 375.6 491 43.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.5e-99 368.2 265 67.5
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 8.6e-95 352.4 629 41.0
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.9e-94 351.3 278 65.8
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 6.6e-79 299.7 286 59.1
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.0e-71 275.8 713 30.9
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 5.6e-70 270.0 349 48.4
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 8.4e-42 176.4 99 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.6e-37 162.2 83 88.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-35 154.8 144 60.4
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 7.6e-35 153.3 114 70.2
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.1e-24 118.6 152 49.3
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 4.8e-21 107.5 54 85.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 5.3e-20 104.0 142 40.8
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.7e-16 91.7 68 67.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.0e-15 89.7 103 48.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.4e-12 79.3 74 60.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.2e-09 68.2 366 24.6
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.7e-08 65.1 80 47.5
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.4e-07 62.8 251 24.3
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 3.0e-07 61.6 272 26.5
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 4.0e-07 61.2 247 23.9
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.5e-06 59.3 264 23.5
PRCOL_00003060 Prasinoderma coloniale HOM05D008474 ORTHO05D010618 2.0e-06 58.9 308 25.0
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.6e-06 58.5 85 40.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 3.3e-06 58.2 69 47.8
Gohir.D12G136100 Gossypium hirsutum HOM05D007982 ORTHO05D010255 7.5e-06 57.0 356 24.2
Cfa016881 Carpinus fangiana HOM05D008447 ORTHO05D010638 9.7e-06 56.6 293 21.8


User provided reference genes

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