Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.6e-283 976.9 466 100.0
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 7.6e-280 966.5 466 98.9
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.7e-199 699.5 462 70.3
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.2e-188 661.4 463 67.4
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 9.5e-182 640.6 463 65.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 6.8e-180 634.4 464 65.3
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.6e-176 623.2 463 63.9
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.5e-176 622.1 467 63.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 5.6e-174 614.8 467 62.5
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.0e-171 606.3 544 55.3
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 7.6e-171 604.4 466 59.7
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.5e-168 595.5 467 61.2
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.3e-167 593.6 466 62.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.7e-167 593.2 425 64.9
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 2.5e-166 589.3 460 60.9
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 4.7e-165 585.1 461 61.2
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 6.8e-164 581.3 467 58.7
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.9e-162 575.9 466 57.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 2.4e-161 572.8 464 59.3
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 8.7e-159 564.3 464 58.2
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 4.3e-158 562.0 409 64.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.1e-157 559.7 512 53.9
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.2e-155 553.9 465 56.8
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 2.2e-154 549.7 461 59.4
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 8.4e-154 547.7 465 57.4
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 6.0e-152 541.6 465 55.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 3.0e-151 539.3 465 56.3
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.5e-150 536.2 459 55.6
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 4.3e-150 535.4 459 53.8
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 4.3e-150 535.4 460 53.9
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.3e-149 533.9 465 53.8
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 3.1e-148 529.3 463 53.3
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.0e-148 528.9 460 55.2
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 4.0e-148 528.9 464 54.5
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.7e-146 523.5 460 53.3
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 4.9e-146 521.9 465 54.8
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 8.4e-146 521.2 460 53.0
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 7.9e-144 514.6 467 53.5
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 7.9e-144 514.6 475 53.7
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.3e-143 513.8 462 53.0
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.0e-139 500.0 464 52.2
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.5e-139 498.8 464 51.9
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.9e-137 493.4 462 53.0
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 4.2e-137 492.3 463 53.1
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 5.5e-137 491.9 468 51.7
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.2e-136 490.7 461 52.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.1e-136 490.0 461 52.7
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.3e-135 487.3 461 52.7
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 6.7e-135 485.0 466 54.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.8e-133 479.6 379 58.8
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.1e-132 475.7 482 50.4
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.3e-130 470.7 460 52.2
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 5.0e-130 468.8 460 52.2
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 6.1e-128 461.8 443 53.7
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.5e-126 457.2 471 49.9
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 5.7e-126 455.3 462 52.4
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.7e-126 454.5 454 49.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 4.8e-125 452.2 470 48.3
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 3.4e-123 446.0 467 47.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 3.4e-123 446.0 467 49.0
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.5e-121 439.9 471 46.9
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 1.6e-120 437.2 471 50.7
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.6e-120 437.2 466 46.6
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.7e-119 431.8 461 48.2
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.0e-118 430.3 392 51.8
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.7e-118 428.7 463 48.2
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.7e-118 428.7 384 56.8
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 7.4e-118 428.3 463 47.9
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 7.4e-118 428.3 447 49.2
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 6.3e-117 425.2 463 47.1
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.4e-116 423.3 463 47.5
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-115 421.0 530 44.7
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.6e-115 419.9 382 54.7
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.5e-113 412.1 464 46.6
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.1e-112 408.7 498 44.2
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.8e-111 407.1 465 44.7
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-110 404.4 494 44.7
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 4.4e-110 402.5 465 44.3
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 9.7e-110 401.4 465 44.5
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.6e-107 393.3 484 43.0
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-104 384.4 459 46.6
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.6e-104 384.0 484 43.6
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 8.0e-104 381.7 462 45.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.3e-103 380.2 469 43.7
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 4.0e-103 379.4 463 44.7
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.5e-102 377.5 417 46.0
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 3.3e-102 376.3 309 57.9
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 9.7e-102 374.8 463 44.7
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.2e-101 373.6 459 45.8
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 9.1e-100 368.2 426 45.3
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 9.1e-100 368.2 462 44.4
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 9.1e-100 368.2 462 43.3
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.6e-99 367.5 464 42.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 3.5e-99 366.3 456 43.0
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 1.3e-98 364.4 457 42.0
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 3.8e-98 362.8 462 43.9
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.5e-97 360.9 468 40.8
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.5e-97 360.1 463 43.4
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.2e-97 359.4 479 41.3
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.2e-97 359.4 479 41.3
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 2.7e-96 356.7 462 43.3
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.6e-96 356.3 465 42.8
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 6.1e-96 355.5 266 60.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.4e-94 349.4 470 41.1
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.7e-93 347.4 464 41.4
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.8e-93 346.7 461 43.4
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 6.3e-93 345.5 256 62.9
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.4e-92 344.4 462 43.7
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 7.0e-92 342.0 482 39.0
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 1.1e-89 334.7 456 39.0
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 1.5e-89 334.3 427 44.5
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.2e-88 331.3 480 39.4
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.1e-88 330.5 483 40.0
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.0e-87 326.6 334 48.8
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.5e-86 324.3 481 38.9
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 2.0e-86 323.9 460 41.7
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 4.4e-86 322.8 435 39.3
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.1e-84 316.2 317 48.3
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 5.4e-84 315.8 262 59.2
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 9.2e-84 315.1 463 41.3
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.7e-83 313.5 388 43.0
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 4.5e-83 312.8 463 39.1
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.3e-82 311.2 311 52.1
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.3e-82 310.5 462 38.1
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-80 304.7 462 37.7
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.2e-80 304.7 462 37.7
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-79 300.8 457 37.9
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 3.0e-79 300.1 462 36.6
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 2.6e-78 297.0 457 37.6
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 9.2e-76 288.5 471 37.2
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.0e-75 287.3 383 40.5
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 9.5e-73 278.5 312 46.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 2.3e-71 273.9 493 33.3
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 9.8e-70 268.5 500 32.8
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.9e-69 266.9 492 34.3
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 3.7e-69 266.5 496 33.1
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-65 255.0 478 35.1
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 9.5e-65 251.9 456 35.5
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 6.2e-64 249.2 304 41.8
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 8.1e-64 248.8 292 45.2
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.3e-63 247.3 511 32.1
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 9.2e-60 235.3 306 42.5
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.6e-59 234.6 297 42.4
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 4.4e-54 216.5 359 35.1
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.7e-48 196.4 142 62.7
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 5.2e-47 193.0 148 63.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.7e-43 180.6 304 37.8
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.1e-42 176.4 143 55.9
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 6.6e-42 176.0 195 46.7
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.1e-39 168.7 205 45.4
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 9.0e-31 139.0 189 38.6
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.3e-25 120.6 426 25.8
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 2.8e-24 117.5 309 28.2
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.7e-24 117.1 88 65.9
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.2e-19 102.1 121 47.9
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 6.7e-18 96.3 70 65.7
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.8e-15 88.2 138 38.4
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.3e-15 86.7 114 44.7
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.3e-15 86.7 131 34.4
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 6.9e-15 86.3 62 64.5
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 8.5e-13 79.3 61 57.4
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.1e-11 74.7 85 37.6
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 2.3e-10 71.2 101 44.6
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.5e-09 67.8 86 40.7
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 9.7e-09 65.9 65 44.6
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 6.3e-08 63.2 39 71.8
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 1.8e-07 61.6 101 40.6


User provided reference genes

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