Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.5e-278 962.6 632 100.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 3.9e-255 884.8 597 99.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 3.0e-207 725.7 593 80.6
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 8.6e-194 681.0 597 81.2
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 2.8e-192 676.0 609 79.6
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 8.1e-192 674.5 601 79.2
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.2e-191 671.8 609 76.0
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 7.5e-190 667.9 603 78.6
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 8.3e-189 664.5 608 74.8
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 6.0e-187 658.3 612 75.8
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.8e-187 657.9 605 79.0
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 6.6e-186 654.8 612 75.7
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 8.6e-186 654.4 610 76.7
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 2.5e-185 652.9 609 77.3
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.3e-185 652.5 606 73.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 5.6e-185 651.7 608 73.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 7.3e-185 651.4 608 76.0
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.2e-184 650.6 611 71.5
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.8e-184 649.4 609 77.2
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 3.6e-184 649.0 613 69.2
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.8e-183 646.7 606 76.4
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.4e-183 646.4 595 73.8
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 2.4e-183 646.4 610 76.7
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 8.9e-183 644.4 604 71.7
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.6e-182 642.9 604 72.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.4e-182 642.1 602 78.7
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.7e-181 640.2 610 76.1
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.9e-181 639.4 611 76.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.1e-180 637.5 598 76.9
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.9e-180 636.7 595 78.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 3.2e-180 636.0 597 77.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 5.4e-180 635.2 602 77.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 6.0e-179 631.7 596 76.2
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.7e-178 630.2 605 72.6
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 3.0e-178 629.4 595 77.5
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 6.6e-178 628.2 605 76.2
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 6.6e-178 628.2 613 76.3
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.1e-177 627.5 610 72.8
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.3e-177 625.5 599 78.1
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 7.3e-177 624.8 605 73.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.1e-176 623.2 602 76.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.8e-176 622.9 600 71.0
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 3.6e-176 622.5 594 75.4
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.6e-176 622.5 600 72.5
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.4e-175 620.5 605 71.9
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.1e-175 619.4 580 78.1
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 3.1e-175 619.4 619 76.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 6.9e-175 618.2 620 71.0
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 9.0e-175 617.8 614 71.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.0e-174 616.7 595 71.8
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 3.4e-174 615.9 621 69.6
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 4.4e-174 615.5 603 71.0
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 5.8e-174 615.1 600 76.2
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 7.6e-174 614.8 574 74.6
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 7.6e-174 614.8 633 64.9
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.3e-173 614.0 556 79.7
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.3e-173 614.0 601 75.7
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 2.2e-173 613.2 608 74.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 4.9e-173 612.1 605 74.4
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 8.4e-173 611.3 605 70.9
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.1e-172 610.9 600 75.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 5.4e-172 608.6 611 70.0
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 9.3e-172 607.8 605 74.2
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.7e-171 606.3 594 71.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 7.8e-171 604.7 604 75.5
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 7.8e-171 604.7 594 73.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-170 604.0 592 71.5
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-170 604.0 592 71.5
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-170 603.6 592 71.3
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.9e-170 602.4 606 74.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 5.1e-170 602.1 592 71.1
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 6.6e-170 601.7 592 71.3
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 6.6e-170 601.7 592 71.3
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.9e-169 600.1 597 71.4
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.9e-169 600.1 597 71.2
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.9e-169 600.1 591 72.6
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.9e-169 600.1 593 75.4
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.6e-169 598.6 594 71.0
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 5.6e-169 598.6 597 71.0
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.3e-168 597.4 597 70.4
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-167 594.3 660 61.7
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 3.1e-167 592.8 596 70.6
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.1e-167 592.8 597 70.5
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.2e-166 590.9 597 67.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.0e-166 590.1 599 67.8
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 5.8e-166 588.6 595 70.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 9.9e-166 587.8 592 70.4
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.9e-164 583.6 588 69.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.2e-164 582.8 618 64.9
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 9.3e-164 581.3 608 73.8
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 6.0e-163 578.6 589 69.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.9e-163 578.2 504 78.4
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.3e-162 577.4 598 63.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 3.0e-162 576.2 608 71.9
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 6.7e-162 575.1 604 68.2
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.9e-161 573.5 608 71.2
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 4.3e-161 572.4 607 69.2
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 5.6e-161 572.0 608 68.9
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.3e-160 570.9 608 68.9
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.1e-159 567.8 605 71.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 3.1e-159 566.2 504 71.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.2e-158 564.3 504 76.2
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.5e-158 563.9 525 75.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 7.9e-155 551.6 609 70.0
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 3.1e-151 539.7 592 55.9
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 4.0e-151 539.3 616 62.8
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 3.8e-149 532.7 599 66.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.5e-148 530.0 610 67.2
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 9.3e-148 528.1 590 64.9
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.5e-145 520.8 601 61.1
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.8e-144 515.8 586 65.4
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 4.2e-140 502.7 522 71.1
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.2e-139 501.1 462 84.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.2e-136 490.3 519 69.4
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.3e-133 481.1 605 67.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.7e-131 473.4 615 55.0
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 3.0e-130 469.9 522 61.1
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 2.4e-127 460.3 618 54.4
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.0e-126 457.2 606 65.5
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 9.1e-119 431.8 557 53.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.8e-111 407.5 573 53.1
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 9.4e-108 395.2 452 50.7
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 2.7e-107 393.7 448 69.9
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.4e-105 386.3 510 56.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.3e-101 374.8 297 68.7
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.3e-98 364.0 297 65.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.7e-93 347.8 473 62.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 7.8e-78 295.8 216 92.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 8.6e-77 292.4 427 61.6
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.1e-75 287.7 184 77.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-73 281.6 269 58.4
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 2.2e-72 277.7 305 51.8
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.9e-71 274.6 250 68.4
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-71 272.7 185 75.1
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.1e-71 272.7 285 82.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-63 248.4 319 67.1
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-63 246.1 181 63.5
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 2.3e-61 241.1 298 48.7
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 9.0e-58 229.2 150 91.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-57 228.4 138 81.9
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.0e-53 214.2 295 48.1
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-51 208.0 294 44.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-50 204.9 216 51.9
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 2.7e-46 191.0 111 85.6
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.5e-44 184.5 111 83.8
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.8e-43 180.3 289 73.0
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 5.3e-42 176.8 87 94.3
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.1e-39 166.4 166 57.2
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.1e-38 164.9 181 54.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-31 142.1 322 50.3
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-27 129.0 123 49.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.2e-27 128.3 93 69.9
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.7e-27 127.5 552 32.2
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.3e-27 126.7 96 69.8
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.3e-27 126.7 96 67.7
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 8.2e-27 126.3 105 63.8
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 4.6e-22 110.5 69 73.9
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 9.7e-20 102.8 523 30.4
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 9.1e-18 96.3 475 39.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.4e-15 89.0 68 61.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 3.2e-15 87.8 64 62.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 3.6e-14 84.3 150 35.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-13 82.0 72 56.9
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.9e-13 80.9 66 63.6
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-12 79.3 154 37.0
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.5e-12 79.0 188 29.3
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 2.0e-12 78.6 66 54.5
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.8e-10 72.0 121 40.5
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.6e-09 68.2 73 45.2
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.3e-08 65.9 52 59.6
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.9e-08 64.7 67 47.8
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.9e-08 64.7 52 59.6
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 3.8e-08 64.3 49 61.2
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 6.5e-08 63.5 45 62.2
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 2.7e-06 58.2 63 49.2
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.6e-06 57.8 68 51.5


User provided reference genes

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