Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 8.9e-84 313.5 155 100.0
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 4.1e-65 251.5 156 82.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 9.2e-65 250.4 156 82.7
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.5e-62 242.3 156 80.8
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.6e-61 239.6 172 74.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.6e-61 239.6 171 74.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 8.1e-61 237.3 156 79.5
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.4e-60 236.5 155 78.1
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 5.2e-60 234.6 154 77.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 5.2e-60 234.6 154 77.9
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.8e-60 234.2 162 76.5
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.0e-59 232.6 155 77.4
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.6e-59 232.3 154 77.3
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.6e-59 232.3 155 77.4
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.4e-59 231.5 155 76.1
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.2e-58 229.2 130 85.4
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.7e-58 228.4 127 86.6
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 4.9e-58 228.0 160 73.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 8.3e-58 227.3 156 75.0
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.1e-57 226.9 141 79.4
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.1e-57 226.9 127 85.8
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.4e-57 225.7 124 87.9
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 3.2e-57 225.3 155 75.5
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 4.1e-57 224.9 127 86.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 9.2e-57 223.8 158 74.1
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.6e-56 223.0 158 74.7
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.6e-56 221.5 155 74.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.7e-55 219.5 144 78.5
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.7e-55 219.5 161 73.9
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.7e-55 219.5 158 72.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.7e-55 219.5 157 71.3
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 2.3e-55 219.2 152 73.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.3e-55 219.2 144 77.8
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.0e-55 218.8 125 88.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 3.9e-55 218.4 127 86.6
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 3.9e-55 218.4 126 84.9
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 5.1e-55 218.0 148 72.3
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 6.6e-55 217.6 154 74.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.1e-54 216.9 127 85.8
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.5e-54 216.5 127 85.8
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.5e-54 216.5 161 71.4
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-54 216.1 149 72.5
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.9e-54 216.1 149 72.5
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.9e-54 216.1 148 71.6
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.9e-54 216.1 155 72.9
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.9e-54 216.1 142 77.5
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.9e-54 216.1 137 80.3
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.5e-54 215.7 157 72.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 2.5e-54 215.7 127 85.0
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.3e-54 214.9 156 74.4
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.3e-54 214.9 156 74.4
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 4.3e-54 214.9 148 72.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 5.6e-54 214.5 155 74.2
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.6e-54 214.5 143 77.6
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 7.3e-54 214.2 159 73.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 9.5e-54 213.8 150 71.3
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 9.5e-54 213.8 148 70.9
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 9.5e-54 213.8 147 76.9
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 9.5e-54 213.8 141 77.3
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.1e-53 212.6 148 70.9
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-53 212.6 148 75.0
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.8e-53 212.2 146 77.4
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.8e-53 212.2 157 73.9
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.6e-53 211.8 143 76.9
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.7e-53 211.5 161 69.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 6.2e-53 211.1 128 79.7
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 8.1e-53 210.7 126 84.1
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.1e-53 210.7 149 73.8
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.1e-53 210.7 167 69.5
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 8.1e-53 210.7 157 71.3
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.4e-52 209.9 157 70.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.1e-52 208.8 149 74.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 4.0e-52 208.4 156 72.4
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 6.8e-52 207.6 161 70.8
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.2e-51 206.8 152 69.1
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.2e-51 206.8 148 69.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.2e-51 206.8 144 75.7
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-51 206.8 127 81.1
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-51 206.8 144 75.7
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 3.4e-51 205.3 144 75.0
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.4e-51 204.9 154 72.1
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 4.4e-51 204.9 149 69.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 5.8e-51 204.5 149 72.5
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 5.8e-51 204.5 146 74.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 9.9e-51 203.8 146 73.3
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 9.9e-51 203.8 146 73.3
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.3e-50 203.4 155 72.9
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.3e-50 203.4 149 71.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.3e-50 203.4 149 71.8
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 2.2e-50 202.6 126 81.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 6.4e-50 201.1 147 73.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 6.4e-50 201.1 147 72.1
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-49 199.9 125 80.8
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.4e-49 199.9 140 74.3
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.9e-49 199.5 148 70.9
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.9e-49 199.5 127 79.5
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 3.2e-49 198.7 156 68.6
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.2e-49 198.4 153 69.3
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.1e-49 197.6 155 69.0
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 9.2e-49 197.2 119 81.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.6e-48 194.9 155 67.7
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.3e-47 193.4 170 65.3
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.3e-47 192.6 118 81.4
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 3.9e-47 191.8 161 66.5
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.1e-47 191.4 127 74.0
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 5.1e-47 191.4 143 68.5
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-46 190.3 143 69.2
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.5e-46 189.9 142 71.1
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.5e-46 189.9 132 71.2
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.5e-46 189.9 119 78.2
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.3e-46 188.3 116 81.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.1e-45 186.0 106 85.8
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.8e-45 185.7 119 74.8
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.8e-45 185.7 105 86.7
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.8e-45 185.7 205 55.6
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.6e-45 185.3 118 77.1
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 5.3e-44 181.4 105 87.6
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.2e-43 180.3 148 68.9
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.2e-43 180.3 116 77.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.0e-43 179.5 203 53.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.0e-43 179.5 141 68.1
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 9.9e-43 177.2 119 73.1
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.9e-43 177.2 149 65.8
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.3e-42 176.8 141 65.2
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.1e-41 173.7 155 58.7
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.1e-41 173.7 120 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.4e-41 173.3 150 62.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.9e-41 172.9 147 67.3
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.4e-41 172.6 176 56.8
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.4e-41 171.4 155 62.6
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 7.1e-41 171.0 129 67.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.6e-40 169.9 155 61.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.5e-40 168.7 121 71.9
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 7.8e-40 167.5 114 75.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 3.9e-39 165.2 125 68.0
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 6.6e-39 164.5 118 66.9
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 8.7e-39 164.1 100 78.0
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.7e-39 164.1 137 65.7
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.5e-38 163.3 124 69.4
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-38 163.3 144 64.6
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-38 163.3 144 64.6
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.5e-38 163.3 151 62.3
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.8e-36 156.4 119 68.1
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.7e-34 149.8 137 62.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.9e-34 149.1 126 59.5
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.9e-34 148.3 95 73.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.5e-30 136.7 76 88.2
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 4.8e-29 131.7 107 65.4
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.2e-26 122.9 131 51.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 3.9e-23 112.1 58 91.4
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.3e-22 108.6 120 46.7
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.3e-21 107.1 68 76.5
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.6e-21 106.7 74 75.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 8.2e-21 104.4 59 81.4
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.3e-20 101.7 126 53.2
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 5.3e-20 101.7 84 66.7
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 6.9e-20 101.3 75 65.3
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 9.0e-20 100.9 58 86.2
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 5.8e-19 98.2 75 64.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 7.6e-19 97.8 75 64.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 4.3e-14 82.0 45 84.4
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 6.3e-13 78.2 132 35.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.1e-12 77.4 136 40.4
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 2.9e-10 69.3 151 31.1
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.0e-07 59.3 34 79.4


User provided reference genes

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