Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 6.5e-106 387.9 272 100.0
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 5.4e-76 288.5 283 81.6
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 2.9e-74 282.7 280 73.2
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 2.9e-74 282.7 276 75.0
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.2e-72 277.3 281 78.6
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 2.1e-72 276.6 282 75.9
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 4.4e-70 268.9 283 75.6
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.7e-69 265.8 288 70.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.6e-67 260.4 272 78.3
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 2.7e-67 259.6 283 74.2
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 2.7e-67 259.6 278 77.3
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 7.7e-67 258.1 283 74.6
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.0e-66 255.4 289 75.1
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.0e-66 255.4 279 77.8
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 8.6e-66 254.6 272 77.6
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 8.6e-66 254.6 284 69.7
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 8.6e-66 254.6 282 75.2
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.1e-65 254.2 272 75.7
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.9e-65 253.4 279 76.3
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 2.5e-65 253.1 282 75.2
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.3e-65 252.7 317 48.6
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.3e-65 252.3 283 76.0
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 9.5e-65 251.1 284 65.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.6e-64 250.4 279 75.6
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.6e-64 250.4 284 74.6
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 2.1e-64 250.0 272 77.2
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 3.6e-64 249.2 272 76.8
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 4.7e-64 248.8 280 74.3
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 4.7e-64 248.8 272 73.9
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 8.0e-64 248.1 278 75.5
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.0e-63 247.7 279 73.8
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.0e-63 247.7 272 76.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.8e-63 246.9 278 71.9
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.8e-63 246.9 282 74.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.8e-63 246.9 270 75.9
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 2.3e-63 246.5 277 76.5
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.2e-63 245.4 272 74.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.8e-63 245.0 284 73.9
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.4e-62 242.7 294 71.8
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.4e-62 242.7 294 71.8
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 5.7e-62 241.9 277 76.2
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 5.7e-62 241.9 279 72.0
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 5.7e-62 241.9 279 72.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 5.7e-62 241.9 280 71.4
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 9.8e-62 241.1 273 76.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 9.8e-62 241.1 364 46.4
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.7e-61 240.4 281 73.3
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.7e-61 240.4 280 73.6
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.9e-61 239.6 284 72.2
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.9e-61 239.6 281 73.7
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 3.7e-61 239.2 220 85.5
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 6.4e-61 238.4 282 73.4
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 6.4e-61 238.4 283 73.1
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 8.3e-61 238.0 282 73.0
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 1.8e-60 236.9 238 66.4
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 3.2e-60 236.1 281 71.9
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 3.2e-60 236.1 281 73.3
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.1e-60 235.7 282 71.6
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 7.0e-60 235.0 284 63.0
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 7.0e-60 235.0 280 72.5
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 7.0e-60 235.0 275 73.1
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 7.0e-60 235.0 261 63.2
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 9.2e-60 234.6 285 72.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 9.2e-60 234.6 287 68.3
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.6e-59 233.8 273 71.8
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 2.0e-59 233.4 285 72.3
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.7e-59 233.0 281 71.5
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 4.6e-59 232.3 219 86.3
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 4.6e-59 232.3 268 73.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 5.9e-59 231.9 293 59.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.3e-58 230.7 290 70.0
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.1e-57 227.6 286 61.5
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 209 89.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 272 70.2
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 5.6e-57 225.3 288 67.4
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 9.5e-57 224.6 273 72.2
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.2e-56 224.2 221 83.7
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.0e-56 221.5 268 54.9
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 6.8e-55 218.4 196 89.3
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 6.8e-55 218.4 196 86.2
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.8e-54 214.5 213 82.6
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 9.2e-52 208.0 276 56.5
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.3e-50 203.4 192 76.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.6e-48 196.1 183 83.1
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.4e-47 194.1 217 65.0
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.4e-44 184.1 219 63.9
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 5.4e-44 182.2 215 62.3
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.9e-42 176.0 231 51.9
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.9e-42 176.0 211 73.9
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.8e-40 169.9 88 92.0
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 4.7e-40 169.1 86 91.9
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.4e-39 167.5 85 91.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 7.6e-38 161.8 88 89.8
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 7.6e-38 161.8 246 44.7
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.9e-37 159.1 85 88.2
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-36 157.5 88 84.1
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-36 157.5 88 84.1
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 1.9e-36 157.1 85 89.4
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 8.6e-34 148.3 216 73.6
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 3.6e-32 142.9 184 55.4
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 3.0e-26 123.2 121 58.7
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.6e-24 117.5 207 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.8e-24 116.7 178 64.0
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 2.6e-22 110.2 143 58.0
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.4e-22 109.8 129 48.8
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-20 104.8 66 77.3
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.5e-17 93.6 77 66.2
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.1e-15 88.2 59 72.9
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 2.2e-13 80.5 45 84.4
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 2.4e-12 77.0 181 47.5
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 6.7e-10 68.9 44 72.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 5.6e-09 65.9 88 50.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.8e-08 63.5 63 57.1
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.2e-06 58.2 52 57.7


User provided reference genes

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