Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 5.4e-156 554.3 281 100.0
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 7.8e-147 523.9 280 91.4
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.3e-146 523.1 280 91.4
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 2.5e-145 518.8 280 91.1
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 5.6e-145 517.7 280 89.6
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 4.7e-144 514.6 280 89.6
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.4e-143 513.1 280 90.0
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.4e-143 513.1 280 90.0
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 8.9e-143 510.4 280 88.9
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.6e-142 508.8 280 88.6
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 4.4e-142 508.1 280 87.5
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 5.8e-142 507.7 280 89.3
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.7e-141 506.1 280 87.9
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.2e-141 505.8 280 87.9
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 6.4e-141 504.2 280 87.9
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 8.4e-141 503.8 280 87.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 2.4e-140 502.3 280 87.1
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 5.4e-140 501.1 280 86.8
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 9.3e-140 500.4 280 87.1
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.7e-139 498.8 280 87.1
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.8e-139 497.3 280 86.4
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 1.3e-138 496.5 280 85.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-138 496.5 280 86.8
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 5.1e-138 494.6 280 85.4
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 5.1e-138 494.6 280 85.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 8.7e-138 493.8 280 85.0
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.1e-137 493.4 280 85.4
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.1e-137 493.4 280 86.1
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.1e-137 493.4 280 85.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 5.6e-137 491.1 291 83.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.3e-136 490.0 280 86.4
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 1.6e-136 489.6 280 87.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 2.1e-136 489.2 280 85.0
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 3.6e-136 488.4 280 84.6
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 6.2e-136 487.6 280 84.6
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-135 486.9 280 85.0
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.1e-135 486.9 280 85.7
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.8e-135 486.1 280 82.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.1e-135 485.3 280 83.6
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 3.1e-135 485.3 280 82.9
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 6.9e-135 484.2 280 80.4
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.6e-134 482.3 280 82.9
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 2.6e-134 482.3 280 83.6
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 5.8e-134 481.1 280 83.6
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 7.6e-134 480.7 280 83.9
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 7.6e-134 480.7 280 82.1
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.7e-133 479.6 280 83.6
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 2.9e-133 478.8 280 82.9
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.8e-133 478.4 269 85.1
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.8e-133 478.4 280 82.9
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 6.4e-133 477.6 280 82.9
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.9e-132 476.1 280 80.4
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.2e-132 474.9 280 82.5
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.3e-132 473.8 280 82.5
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.2e-131 473.4 280 82.1
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.2e-131 473.4 280 82.5
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.6e-131 473.0 280 82.1
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 3.5e-131 471.9 280 82.1
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.0e-131 471.1 282 82.3
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.8e-130 469.5 275 83.6
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.3e-130 469.2 284 81.7
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 8.7e-130 467.2 281 84.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 1.6e-128 463.0 280 80.7
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 2.8e-128 462.2 278 81.3
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 2.8e-128 462.2 280 81.1
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.8e-128 462.2 316 73.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 6.2e-128 461.1 280 80.7
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.1e-127 460.3 264 85.2
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.4e-127 459.9 281 80.1
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.4e-127 459.9 286 78.7
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.4e-127 459.1 280 82.1
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 4.0e-127 458.4 280 80.4
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 5.3e-127 458.0 280 80.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 6.9e-127 457.6 339 69.6
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.2e-126 456.8 281 80.8
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.2e-126 456.8 283 81.3
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 4.5e-126 454.9 281 79.7
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 7.6e-126 454.1 281 80.4
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 9.9e-126 453.8 281 80.8
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.3e-125 453.4 290 77.6
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.7e-125 453.0 264 83.0
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.7e-125 453.0 264 85.2
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.2e-125 452.6 284 80.3
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.4e-124 449.1 281 78.6
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.2e-124 448.7 284 79.6
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 7.1e-124 447.6 280 81.4
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.1e-124 447.6 280 77.9
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 9.3e-124 447.2 284 79.2
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.1e-123 446.0 284 78.9
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.1e-123 446.0 280 78.2
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 4.6e-123 444.9 280 78.6
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.0e-123 444.5 284 78.9
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.0e-123 444.5 281 79.0
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 6.0e-123 444.5 281 79.4
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 7.9e-123 444.1 280 77.1
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 7.9e-123 444.1 293 78.2
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.0e-122 443.7 281 79.4
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 2.3e-122 442.6 280 76.1
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 3.9e-122 441.8 284 79.2
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 5.1e-122 441.4 284 78.2
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 6.7e-122 441.0 284 79.2
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 8.7e-122 440.7 284 78.9
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 8.7e-122 440.7 284 79.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 1.1e-121 440.3 311 72.0
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.5e-121 439.9 284 78.5
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.6e-121 438.0 277 76.5
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 7.4e-121 437.6 284 78.5
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 9.6e-121 437.2 264 79.5
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.6e-120 436.4 240 87.9
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.1e-120 436.0 284 75.0
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 2.1e-120 436.0 264 79.9
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 4.8e-120 434.9 281 77.9
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.4e-119 433.3 325 69.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 5.3e-119 431.4 280 77.1
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 3.4e-118 428.7 267 78.7
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.8e-118 427.9 281 75.8
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.2e-117 426.0 276 77.9
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 8.4e-117 424.1 280 77.1
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.2e-115 420.2 284 72.2
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 3.5e-115 418.7 270 78.5
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.0e-114 417.2 280 70.4
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.0e-114 417.2 280 70.4
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.8e-114 416.4 282 77.0
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.8e-114 416.4 282 77.0
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 6.3e-112 407.9 247 79.4
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.8e-111 406.4 280 75.4
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 9.0e-111 404.1 280 71.8
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.5e-110 403.3 304 67.1
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 7.6e-110 401.0 270 76.3
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 6.5e-109 397.9 250 80.0
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 2.7e-107 392.5 287 69.3
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 4.6e-107 391.7 229 81.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.8e-106 389.8 274 74.1
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.4e-105 384.4 266 70.3
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 1.3e-104 383.6 281 70.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.8e-104 382.5 339 62.2
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.1e-103 380.6 213 85.9
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.0e-101 371.7 281 63.3
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.4e-100 370.2 213 82.6
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 7.2e-100 367.9 223 79.4
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-99 367.1 258 74.4
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.0e-98 364.0 279 65.9
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 2.0e-89 333.2 267 62.2
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.6e-89 332.8 249 71.5
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 6.7e-82 308.1 283 57.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 4.4e-81 305.4 236 65.7
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.7e-80 303.5 281 61.2
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 3.7e-72 275.8 213 60.6
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.9e-58 228.0 282 51.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.1e-55 219.2 328 44.5
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.7e-54 216.5 172 64.0
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 2.3e-53 213.4 172 65.1
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.9e-53 212.6 209 60.3
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 3.9e-53 212.6 173 59.5
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 2.3e-50 203.4 120 75.0
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 8.9e-50 201.4 269 47.2
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.6e-45 185.3 122 75.4
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.1e-43 178.3 180 53.9
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-31 141.4 304 38.2
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.3e-29 133.7 85 71.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 3.0e-29 133.3 275 39.6
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 3.8e-24 116.3 223 32.3
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.4e-24 115.5 120 51.7
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-23 114.8 162 43.8
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.2e-23 112.8 63 88.9
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-22 111.3 186 42.5
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 7.3e-20 102.1 94 55.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-16 91.3 74 67.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.9e-14 82.0 47 87.2
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.9e-07 60.8 49 63.3
CBR_g928 Chara braunii HOM05D015229 ORTHO05D017822 9.3e-07 58.5 170 28.8


User provided reference genes

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