Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-99 366.7 179 100.0
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-69 266.2 178 74.2
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-48 196.1 176 58.0
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-42 174.1 132 64.4
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-34 150.2 180 44.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 9.8e-18 94.4 183 32.8
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.3e-17 94.0 138 41.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-16 90.5 188 33.0
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 4.1e-16 89.0 174 32.8
Atru.chr1.4089 Acer truncatum HOM05D004737 ORTHO05D052006 5.4e-16 88.6 125 43.2
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 5.4e-16 88.6 174 33.9
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.4e-16 88.6 179 32.4
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.0e-15 86.7 174 31.6
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.7e-15 86.3 173 32.9
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 2.7e-15 86.3 179 31.8
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-15 85.9 138 34.1
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 4.5e-15 85.5 177 34.5
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 5.9e-15 85.1 171 29.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 5.9e-15 85.1 173 31.2
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 7.7e-15 84.7 179 29.1
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 7.7e-15 84.7 173 31.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 7.7e-15 84.7 138 34.1
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.0e-14 84.3 173 31.2
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.0e-14 84.3 182 30.2
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 135 37.0
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 173 31.2
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-14 83.6 197 27.9
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.7e-14 83.6 179 27.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.7e-14 83.6 180 28.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.7e-14 83.6 179 32.4
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.7e-14 83.6 171 27.5
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.7e-14 83.6 171 30.4
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 3.8e-14 82.4 178 30.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.0e-14 82.0 172 26.2
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 6.5e-14 81.6 173 30.6
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 6.5e-14 81.6 171 30.4
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 6.5e-14 81.6 171 30.4
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 8.5e-14 81.3 171 29.8
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.5e-13 80.5 147 32.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.5e-13 80.5 173 32.9
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-13 80.1 188 31.4
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.9e-13 80.1 147 32.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.5e-13 79.7 179 27.9
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.5e-13 79.7 179 27.9
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.5e-13 79.7 179 27.9
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.5e-13 79.7 182 29.7
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.5e-13 79.7 179 28.5
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 3.2e-13 79.3 144 32.6
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 4.2e-13 79.0 179 28.5
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 4.2e-13 79.0 179 27.9
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 4.2e-13 79.0 179 27.9
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.2e-13 79.0 173 28.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 5.5e-13 78.6 172 29.1
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 5.5e-13 78.6 185 28.1
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 7.2e-13 78.2 180 29.4
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-13 77.8 128 33.6
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 9.4e-13 77.8 179 27.9
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 9.4e-13 77.8 135 32.6
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.6e-12 77.0 182 27.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.6e-12 77.0 182 27.5
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.6e-12 77.0 179 27.9
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.6e-12 77.0 179 27.9
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.1e-12 76.6 180 30.0
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.1e-12 76.6 125 32.8
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 2.7e-12 76.3 181 27.6
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 3.6e-12 75.9 173 28.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 3.6e-12 75.9 179 27.9
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.6e-12 75.9 138 31.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 3.6e-12 75.9 181 28.2
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 4.7e-12 75.5 136 30.9
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 4.7e-12 75.5 167 32.3
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 8.0e-12 74.7 178 28.7
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 8.0e-12 74.7 173 29.5
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.0e-11 74.3 139 31.7
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.4e-11 73.9 173 28.9
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.8e-11 73.6 173 28.9
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.8e-11 73.6 173 28.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.8e-11 73.6 178 30.3
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 4.0e-11 72.4 174 28.7
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 4.0e-11 72.4 136 30.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.2e-11 72.0 168 26.2
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 5.2e-11 72.0 175 29.1
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.8e-11 71.2 180 27.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.2e-10 70.9 181 28.2
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-10 70.5 195 26.2
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.5e-10 70.5 173 28.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.0e-10 70.1 173 28.9
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.0e-10 70.1 171 27.5
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.0e-10 70.1 179 25.7
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 2.6e-10 69.7 172 27.9
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 4.4e-10 68.9 125 30.4
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 4.4e-10 68.9 127 30.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 4.4e-10 68.9 172 27.3
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 5.7e-10 68.6 170 28.2
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 5.7e-10 68.6 184 28.8
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 5.7e-10 68.6 171 24.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.3e-09 67.4 180 26.1
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.7e-09 67.0 177 26.0
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-09 66.6 132 32.6
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-09 65.9 129 34.1
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-09 65.9 142 29.6
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 3.7e-09 65.9 133 27.1
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.9e-09 65.5 127 29.9
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 6.3e-09 65.1 173 27.7
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.4e-08 63.2 171 23.4
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 4.1e-08 62.4 171 25.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 4.1e-08 62.4 187 27.3
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 9.1e-08 61.2 126 30.2
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 9.1e-08 61.2 172 24.4
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-07 60.8 140 28.6
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.5e-07 59.3 208 24.5
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 4.5e-07 58.9 125 26.4
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 5.9e-07 58.5 141 24.8
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 7.7e-07 58.2 172 25.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 3.8e-06 55.8 136 31.6
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.8e-06 55.8 125 25.6


User provided reference genes

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