Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.2670 Acer truncatum HOM05D000929 ORTHO05D004813 3.4e-21 104.0 50 100.0
Ciclev10010995m.g Citrus clementina HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
Dinv37432 Davidia involucrata HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
Dinv41800 Davidia involucrata HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
Potri.004G235200 Populus trichocarpa HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
Sabra01G0179900 Salix brachista HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
GSVIVG01036887001 Vitis vinifera HOM05D000929 ORTHO05D004813 2.5e-19 97.8 50 94.0
Atru.chr8.2611 Acer truncatum HOM05D000929 ORTHO05D004813 5.5e-19 96.7 50 92.0
Lj8C361G1 Lonicera japonica HOM05D000929 ORTHO05D004813 5.5e-19 96.7 50 92.0
Nn1g08153 Nelumbo nucifera HOM05D000929 ORTHO05D004813 5.5e-19 96.7 50 92.0
Eucgr.E01151 Eucalyptus grandis HOM05D000929 ORTHO05D004813 9.4e-19 95.9 50 92.0
HanXRQChr03g0084681 Helianthus annuus HOM05D000929 ORTHO05D004813 9.4e-19 95.9 50 92.0
DCAR_004536 Daucus carota HOM05D000929 ORTHO05D004813 1.6e-18 95.1 50 90.0
QL12p003602 Quercus lobata HOM05D000929 ORTHO05D004813 1.6e-18 95.1 50 92.0
AL1G45800 Arabidopsis lyrata HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
AT1G31730 Arabidopsis thaliana HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BcaB07g32818 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BcaC05g26444 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BcaC05g26656 Brassica carinata HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
A09p34650 Brassica napus HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
A09p39530 Brassica napus HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
C05p24930 Brassica napus HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BolC5t31222H Brassica oleracea HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BraA09t38999Z Brassica rapa HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
BraA09t39452Z Brassica rapa HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
Carub.0001s3003 Capsella rubella HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
CARHR031030 Cardamine hirsuta HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
CiPaw.12G055500 Carya illinoinensis HOM05D000929 ORTHO05D004813 2.1e-18 94.7 49 91.8
CDE02G1294 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 90.0
CDE06G0186 Ceratophyllum demersum HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 90.0
Thhalv10006719m.g Eutrema salsugineum HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
THA.LOC104798531 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 2.1e-18 94.7 50 92.0
MSTRG.25749 Avicennia marina HOM05D000929 ORTHO05D004813 2.7e-18 94.4 50 90.0
TAR362G0882 Trochodendron aralioides HOM05D000929 ORTHO05D004813 2.7e-18 94.4 50 90.0
HanXRQChr13g0412771 Helianthus annuus HOM05D000929 ORTHO05D004813 3.6e-18 94.0 50 90.0
Lsat_1_v5_gn_6_77000 Lactuca sativa HOM05D000929 ORTHO05D004813 3.6e-18 94.0 50 90.0
Sp1g27400 Schrenkiella parvula HOM05D000929 ORTHO05D004813 3.6e-18 94.0 50 90.0
TWI60G0350 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 3.6e-18 94.0 50 92.0
Aqoxy2G03914 Aquilegia oxysepala HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
Duzib205G0211 Durio zibethinus HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
Gohir.A08G148700 Gossypium hirsutum HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
Gohir.D12G203900 Gossypium hirsutum HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
Gorai.008G218700 Gossypium raimondii HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
SEGI_41236 Sequoiadendron giganteum HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 88.0
Thecc.03G320400 Theobroma cacao HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 90.0
TAR636G3540 Trochodendron aralioides HOM05D000929 ORTHO05D004813 4.6e-18 93.6 50 88.0
EL10Ac5g12482 Beta vulgaris HOM05D000929 ORTHO05D004813 6.1e-18 93.2 50 90.0
CSS0043960 Camellia sinensis var. sinensis HOM05D000929 ORTHO05D004813 6.1e-18 93.2 50 90.0
Cfa012306 Carpinus fangiana HOM05D000929 ORTHO05D004813 6.1e-18 93.2 50 90.0
CiPaw.11G074100 Carya illinoinensis HOM05D000929 ORTHO05D004813 6.1e-18 93.2 50 90.0
Rhsim11G0037600 Rhododendron simsii HOM05D000929 ORTHO05D004813 6.1e-18 93.2 50 88.0
BcaC05g27184 Brassica carinata HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
C05p30850 Brassica napus HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
BolC5t31815H Brassica oleracea HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
ECA240G1531 Erigeron canadensis HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 88.0
Hma1.2p1_0262F.1_g105380 Hydrangea macrophylla HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
Lj4g0001871 Lotus japonicus HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
Oeu046773.1 Olea europaea HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
PSO017G4228 Papaver somniferum HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
PSO063G0460 Papaver somniferum HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
TWI32G0464 Tripterygium wilfordii HOM05D000929 ORTHO05D004813 7.9e-18 92.8 50 90.0
ATR0069G035 Amborella trichopoda HOM05D000929 ORTHO05D004813 1.0e-17 92.4 50 90.0
AUR62030759 Chenopodium quinoa HOM05D000929 ORTHO05D004813 1.0e-17 92.4 50 90.0
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 1.0e-17 92.4 50 90.0
Migut.A00470 Erythranthe guttata HOM05D000929 ORTHO05D004813 1.0e-17 92.4 50 90.0
THA.LOC104814388 Tarenaya hassleriana HOM05D000929 ORTHO05D004813 1.0e-17 92.4 50 90.0
Aa31LG9G15770 Aethionema arabicum HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
MSTRG.11858 Avicennia marina HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 88.0
FvH4_5g25110 Fragaria vesca HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
FAN08G3498 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
FAN13G0018 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
FAN18G2918 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
FAN18G3633 Fragaria x ananassa HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
Prupe.2G056200 Prunus persica HOM05D000929 ORTHO05D004813 1.4e-17 92.0 50 90.0
CAN.G998.9 Capsicum annuum HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Cc08_g05960 Coffea canephora HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Haze_08424 Corylus avellana HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Duzib068G0752 Durio zibethinus HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Gohir.A12G201100 Gossypium hirsutum HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Nitab4.5_0000986g0030 Nicotiana tabacum HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Nitab4.5_0007507g0010 Nicotiana tabacum HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Peaxi162Scf00053g00316 Petunia axillaris HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Sc22g0002840 Simmondsia chinensis HOM05D000929 ORTHO05D004813 1.8e-17 91.7 50 88.0
Ca_22458_v3 Cicer arietinum L. HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
Glyma.01G153200 Glycine max HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
Glyma.16G109200 Glycine max HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
Phvul.002G122300 Phaseolus vulgaris HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
RcHm_v2.0_Chr4g0407221 Rosa chinensis HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
RcHm_v2.0_Chr7g0215311 Rosa chinensis HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
SalBow4G0955 Salvia bowleyana HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
Hund14936 Selenicereus undatus HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
vmacro00098 Vaccinium macrocarpon HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 86.0
HPP92_006225 Vanilla planifolia HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
VMungo1215G3448 Vigna mungo HOM05D000929 ORTHO05D004813 2.3e-17 91.3 50 88.0
arahy.Tifrunner.gnm1.ann1.C95Z0S Arachis hypogaea HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 86.0
arahy.Tifrunner.gnm1.ann1.HVM0CV Arachis hypogaea HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 86.0
CANSAT35G1067 Cannabis sativa HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 90.0
Gohir.D08G169800 Gossypium hirsutum HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
Gorai.004G177000 Gossypium raimondii HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
Medtr8g072250 Medicago truncatula HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
Psat4g108000 Pisum sativum HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
SGA_v2.0_scaffold96G29109 Striga asiatica HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
TPR.G14264 Trifolium pratense HOM05D000929 ORTHO05D004813 3.0e-17 90.9 50 88.0
Cpa.g.sc24.17 Carica papaya HOM05D000929 ORTHO05D004813 3.9e-17 90.5 50 88.0
COL.COLO4_16747 Corchorus olitorius HOM05D000929 ORTHO05D004813 3.9e-17 90.5 50 86.0
Actinidia01247 Actinidia chinensis HOM05D000929 ORTHO05D004813 5.1e-17 90.1 50 88.0
Ah.02g115480 Amaranthus hybridus HOM05D000929 ORTHO05D004813 5.1e-17 90.1 50 84.0
FAN04G0569 Fragaria x ananassa HOM05D000929 ORTHO05D004813 5.1e-17 90.1 50 88.0
MD02G1267100 Malus domestica HOM05D000929 ORTHO05D004813 5.1e-17 90.1 50 88.0
MD07G1052000 Malus domestica HOM05D000929 ORTHO05D004813 5.1e-17 90.1 49 89.8
Hund10896 Selenicereus undatus HOM05D000929 ORTHO05D004813 5.1e-17 90.1 50 84.0
Oeu023056.3 Olea europaea HOM05D000929 ORTHO05D004813 6.7e-17 89.7 50 84.0
Lalb_Chr16g0391781 Lupinus albus HOM05D000929 ORTHO05D004813 8.8e-17 89.4 50 86.0
Glyma.16G076500 Glycine max HOM05D000929 ORTHO05D004813 1.1e-16 89.0 50 86.0
PGR031G1573 Punica granatum HOM05D000929 ORTHO05D004813 1.1e-16 89.0 49 85.7
Lalb_Chr09g0325051 Lupinus albus HOM05D000929 ORTHO05D004813 2.0e-16 88.2 50 84.0
Glyma.09G218500 Glycine max HOM05D000929 ORTHO05D004813 2.5e-16 87.8 50 84.0
Os01g0916200 Oryza sativa ssp. japonica HOM05D000929 ORTHO05D004813 2.5e-16 87.8 50 84.0
Zm00001eb143480 Zea mays HOM05D000929 ORTHO05D004813 2.5e-16 87.8 50 84.0
Zm00001eb364820 Zea mays HOM05D000929 ORTHO05D004813 2.5e-16 87.8 50 84.0
Lsat_1_v5_gn_3_20441 Lactuca sativa HOM05D000929 ORTHO05D004813 3.3e-16 87.4 50 84.0
Manes.17G001200 Manihot esculenta HOM05D000929 ORTHO05D004813 4.3e-16 87.0 50 86.0
Lalb_Chr05g0215171 Lupinus albus HOM05D000929 ORTHO05D004813 7.4e-16 86.3 50 82.0
Solyc08g075310.4 Solanum lycopersicum HOM05D000929 ORTHO05D004813 7.4e-16 86.3 50 84.0
Sopen08g023910 Solanum pennellii HOM05D000929 ORTHO05D004813 7.4e-16 86.3 50 84.0
Prupe.2G018400 Prunus persica HOM05D000929 ORTHO05D004813 9.7e-16 85.9 50 84.0
MELO3C010526.2 Cucumis melo HOM05D000929 ORTHO05D004813 1.3e-15 85.5 50 80.0
CsaV3_4G014930 Cucumis sativus L. HOM05D000929 ORTHO05D004813 1.3e-15 85.5 50 80.0
CsaV3_UNG237520 Cucumis sativus L. HOM05D000929 ORTHO05D004813 1.3e-15 85.5 50 80.0
ClCG11G016100 Citrullus lanatus HOM05D000929 ORTHO05D004813 3.7e-15 84.0 50 78.0
Sed0024593 Sechium edule HOM05D000929 ORTHO05D004813 4.8e-15 83.6 50 78.0
SHI32765 Sapria himalayana HOM05D000929 ORTHO05D004813 6.3e-15 83.2 50 80.0
Sed0019322 Sechium edule HOM05D000929 ORTHO05D004813 6.3e-15 83.2 50 78.0
AagrBONN_evm.TU.Sc2ySwM_344.3572 Anthoceros agrestis HOM05D000929 ORTHO05D004813 1.5e-13 78.6 50 74.0
Mapoly0011s0005 Marchantia polymorpha HOM05D000929 ORTHO05D004813 2.0e-13 78.2 50 76.0
SMO117G0056 Selaginella moellendorffii HOM05D000929 ORTHO05D004813 1.3e-12 75.5 50 68.0
Pp3c12_14810 Physcomitrium patens HOM05D000929 ORTHO05D004813 6.5e-12 73.2 50 70.0
Pp3c12_18560 Physcomitrium patens HOM05D000929 ORTHO05D004813 6.5e-12 73.2 50 70.0
CBR_g31532 Chara braunii HOM05D000929 ORTHO05D004813 2.1e-10 68.2 50 66.0
MCO16G352 Micromonas commoda HOM05D000929 ORTHO05D004813 3.1e-06 54.3 49 51.0


User provided reference genes

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