Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 2.4e-59 231.9 110 100.0
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 1.7e-25 119.4 58 91.4
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 5.2e-22 107.8 58 81.0
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 2.0e-21 105.9 61 75.4
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 2.0e-21 105.9 56 82.1
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 2.0e-21 105.9 57 80.7
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 3.4e-21 105.1 57 78.9
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 4.4e-21 104.8 57 78.9
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 4.4e-21 104.8 57 78.9
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 4.4e-21 104.8 57 78.9
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 5.8e-21 104.4 57 73.7
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 5.8e-21 104.4 57 77.2
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 7.6e-21 104.0 57 78.9
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 7.6e-21 104.0 57 78.9
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 7.6e-21 104.0 53 84.9
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 9.9e-21 103.6 57 78.9
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 9.9e-21 103.6 55 80.0
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 1.3e-20 103.2 55 80.0
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 1.7e-20 102.8 58 72.4
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 1.7e-20 102.8 55 78.2
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 2.9e-20 102.1 57 75.4
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 3.8e-20 101.7 57 75.4
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 3.8e-20 101.7 57 75.4
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 3.8e-20 101.7 57 77.2
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 3.8e-20 101.7 55 78.2
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 4.9e-20 101.3 57 77.2
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 4.9e-20 101.3 57 77.2
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.4e-19 99.8 53 81.1
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 1.4e-19 99.8 53 79.2
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 1.4e-19 99.8 57 71.9
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.4e-19 99.8 57 70.2
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 1.9e-19 99.4 53 77.4
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 1.9e-19 99.4 53 77.4
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 1.9e-19 99.4 53 77.4
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 1.9e-19 99.4 53 77.4
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 1.9e-19 99.4 53 77.4
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 2.4e-19 99.0 53 77.4
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 2.4e-19 99.0 51 84.3
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 2.4e-19 99.0 57 78.9
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 2.4e-19 99.0 55 74.5
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 3.2e-19 98.6 57 71.9
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 3.2e-19 98.6 57 73.7
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 4.1e-19 98.2 53 79.2
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 4.1e-19 98.2 57 71.9
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 4.1e-19 98.2 57 71.9
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 4.1e-19 98.2 55 74.5
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 5.4e-19 97.8 53 75.5
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 7.1e-19 97.4 55 72.7
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 7.1e-19 97.4 55 72.7
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 7.1e-19 97.4 55 72.7
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 7.1e-19 97.4 55 72.7
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 7.1e-19 97.4 53 77.4
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 1.6e-18 96.3 57 68.4
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 1.6e-18 96.3 53 77.4
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.6e-18 96.3 57 66.7
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 2.7e-18 95.5 57 71.9
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 3.5e-18 95.1 58 69.0
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 3.5e-18 95.1 53 73.6
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 4.6e-18 94.7 56 73.2
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 6.0e-18 94.4 53 75.5
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 6.0e-18 94.4 53 75.5
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 6.0e-18 94.4 61 63.9
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 6.0e-18 94.4 53 73.6
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 6.0e-18 94.4 52 76.9
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 7.8e-18 94.0 53 77.4
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 7.8e-18 94.0 53 73.6
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 1.0e-17 93.6 55 69.1
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.3e-17 93.2 55 69.1
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 2.3e-17 92.4 55 69.1
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 3.9e-17 91.7 53 77.4
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 5.1e-17 91.3 57 63.2
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 5.1e-17 91.3 53 77.4
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 5.1e-17 91.3 53 77.4
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 6.6e-17 90.9 53 77.4
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 8.7e-17 90.5 53 75.5
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 8.7e-17 90.5 55 74.5
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 1.1e-16 90.1 58 63.8
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 2.5e-16 89.0 53 73.6
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 3.3e-16 88.6 53 71.7
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 3.3e-16 88.6 53 71.7
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 3.3e-16 88.6 54 66.7
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 3.3e-16 88.6 58 70.7
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 4.3e-16 88.2 55 70.9
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 4.3e-16 88.2 53 71.7
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 5.6e-16 87.8 53 71.7
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 7.3e-16 87.4 57 66.7
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 1.2e-15 86.7 53 67.9
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 2.1e-15 85.9 53 69.8
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 2.1e-15 85.9 54 64.8
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 2.8e-15 85.5 53 66.0
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 8.1e-15 84.0 53 67.9
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.8e-14 82.8 49 75.5
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 3.1e-14 82.0 53 64.2
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 3.1e-14 82.0 53 67.9
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 3.1e-14 82.0 53 67.9
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 9.0e-14 80.5 53 64.2
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 9.0e-14 80.5 55 60.0
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 5.8e-13 77.8 54 66.7
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.3e-12 76.6 57 54.4
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.8e-12 75.1 58 51.7
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 1.9e-11 72.8 53 54.7
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.2e-10 70.1 74 48.6
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 2.7e-10 68.9 74 47.3
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 4.6e-10 68.2 52 59.6
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 7.8e-10 67.4 40 72.5
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 3.0e-09 65.5 40 72.5
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 3.0e-09 65.5 55 52.7
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 1.9e-08 62.8 58 46.6


User provided reference genes

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