Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 2562.7 1294 100.0
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 2045.0 1296 79.2
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1880.1 1301 71.8
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1873.6 1299 72.8
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1858.2 1295 72.6
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1857.4 1296 72.8
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1839.7 1294 72.1
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1829.3 1305 71.5
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1824.3 1327 70.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1823.1 1297 71.8
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1810.4 1312 71.2
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1805.4 1298 70.7
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1795.0 1300 70.8
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1778.5 1246 73.1
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1772.7 1299 70.0
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1766.9 1298 69.1
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1759.6 1311 68.4
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1759.2 1276 70.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1758.4 1297 69.7
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1758.0 1300 68.6
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1754.2 1300 69.7
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1751.5 1301 69.6
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1749.2 1335 67.3
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1743.0 1311 68.3
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1742.6 1389 64.9
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1736.9 1267 69.1
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1731.8 1422 64.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1711.4 1301 66.9
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1711.4 1297 66.7
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1710.3 1298 67.6
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1709.9 1300 66.6
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1708.3 1191 72.5
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1699.1 1303 66.5
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1693.7 1296 67.0
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1692.6 1298 66.3
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1687.2 1297 66.2
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1680.6 1359 64.5
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1676.4 1303 66.1
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1673.3 1320 64.8
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1668.7 1300 65.8
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1668.3 1314 65.4
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1668.3 1296 65.7
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1663.7 1298 64.7
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1660.2 1299 65.4
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1657.9 1297 64.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1649.8 1300 65.4
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1646.7 1299 64.9
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1642.1 1300 63.6
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1626.7 1296 64.4
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1610.5 1111 74.2
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1610.1 1316 63.6
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1609.0 1112 74.1
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1608.6 1308 62.8
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1601.3 1303 63.2
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1595.9 1293 62.8
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1585.5 1293 62.7
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1579.3 1303 61.7
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1575.1 1302 62.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1571.2 1301 62.6
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1569.3 1298 62.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1563.9 1298 62.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1561.2 1300 62.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1560.4 1116 72.0
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1559.7 1304 62.0
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1559.3 1301 61.0
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1556.6 1304 61.8
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1555.8 1305 62.1
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1554.3 1366 58.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1553.9 1304 61.8
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1552.7 1304 62.0
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1552.3 1305 61.9
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1551.6 1303 61.6
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1544.6 1304 60.4
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1533.9 1320 60.2
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1533.5 1311 61.3
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1531.5 1293 59.9
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1530.0 1299 60.6
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1529.6 1312 61.4
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1525.8 1295 61.9
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1507.7 1312 59.5
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1503.4 1077 69.9
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1502.3 1291 59.4
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1483.0 1409 57.8
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1477.6 1294 60.4
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1463.0 1155 64.1
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1462.6 1123 68.1
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1460.3 1298 56.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1453.7 1113 66.4
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1453.3 1296 58.3
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1162 65.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1434.5 1081 66.4
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1429.8 1303 56.0
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1429.5 1307 57.0
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1298 58.8
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1375.5 1298 54.4
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1364.4 1215 58.9
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1350.5 1330 54.4
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1325.8 1300 53.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1317.4 1281 53.6
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1303.1 1287 53.8
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1248.8 1307 52.5
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1181.4 1403 48.3
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.0e-289 1000.7 927 56.1
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.4e-283 980.3 648 74.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.5e-280 970.3 755 66.2
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.8e-278 963.4 847 59.4
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 2.9e-265 919.5 1346 39.7
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 4.4e-253 879.0 1364 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 4.6e-250 869.0 1183 42.6
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 7.4e-216 755.4 1296 36.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.4e-198 698.0 926 43.7
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.3e-193 681.4 570 60.4
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.1e-171 608.6 660 49.5
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.8e-169 601.3 379 80.2
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.3e-156 557.8 505 62.4
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 6.5e-156 556.2 349 80.2
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 6.1e-146 523.1 463 58.7
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 4.0e-137 493.8 322 74.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.2e-110 404.1 222 84.7
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 7.9e-101 373.2 1077 27.3
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.5e-93 347.8 214 80.4
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.3e-92 345.9 478 43.5
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.3e-92 345.1 211 80.1
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 7.4e-91 340.1 426 44.6
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 1.8e-89 335.5 214 76.2
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.3e-76 292.0 294 53.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.4e-73 282.0 1051 24.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.5e-70 271.9 163 76.1
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.7e-63 249.2 148 74.3
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-60 239.6 189 58.2
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.5e-59 236.1 725 26.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 4.4e-51 208.0 985 23.5
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.7e-50 206.1 177 56.5
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.7e-47 196.1 217 42.9
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.7e-45 188.7 143 68.5
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-40 173.3 121 67.8
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 7.7e-40 170.6 122 62.3
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.7e-39 169.5 209 42.6
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 2.9e-39 168.7 152 55.9
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 1.4e-36 159.8 120 67.5
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.4e-35 155.2 110 72.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.7e-34 152.9 116 77.6
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 8.3e-34 150.6 152 50.7
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 5.0e-31 141.4 179 45.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.1e-30 140.2 113 75.2
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.3e-26 126.7 318 33.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.9e-26 125.6 209 38.3
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 6.0e-24 117.9 206 35.0
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.3e-22 112.1 88 64.8
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 3.1e-20 105.5 83 67.5
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-18 100.1 86 59.3
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.7e-18 99.8 69 63.8
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 1.6e-16 93.2 65 63.1
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 9.5e-14 84.0 57 64.9
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.8e-13 82.4 201 31.3
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.3e-10 73.6 85 47.1
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 2.9e-10 72.4 86 47.7
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.5e-08 65.5 44 75.0
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.3e-07 63.5 41 68.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.7e-07 63.2 81 60.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.0e-07 62.4 73 63.0
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 3.3e-06 58.9 60 48.3


User provided reference genes

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