Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 4.0e-144 515.0 310 100.0
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 4.7e-68 262.3 337 56.4
Atru.chr10.503 Acer truncatum HOM05D006924 ORTHO05D008218 5.7e-66 255.4 294 59.5
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 4.2e-61 239.2 317 54.3
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 1.4e-59 234.2 291 52.2
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 3.4e-58 229.6 342 44.7
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 2.0e-55 220.3 335 45.1
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 2.3e-54 216.9 328 44.2
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 3.8e-54 216.1 329 43.2
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 5.0e-54 215.7 341 47.2
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 8.6e-54 214.9 338 46.2
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 7.3e-53 211.8 332 44.0
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 4.7e-52 209.1 346 45.1
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 1.4e-51 207.6 346 42.8
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 6.8e-51 205.3 346 42.2
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 8.9e-51 204.9 340 42.4
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 8.9e-51 204.9 330 45.5
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 2.0e-50 203.8 342 45.9
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 2.0e-50 203.8 342 45.9
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 4.4e-50 202.6 344 43.6
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 9.8e-50 201.4 325 41.8
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 1.3e-49 201.1 267 47.6
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 2.2e-49 200.3 344 47.1
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.2e-49 200.3 346 46.0
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.9e-49 199.9 267 47.2
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 4.9e-49 199.1 159 65.4
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 8.3e-49 198.4 352 44.3
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 8.3e-49 198.4 331 49.2
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 1.8e-48 197.2 339 44.0
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 2.4e-48 196.8 312 45.8
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 2.4e-48 196.8 329 41.6
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 2.4e-48 196.8 159 64.8
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 4.1e-48 196.1 340 44.4
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 7.0e-48 195.3 331 45.6
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.2e-47 194.5 344 40.7
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 1.2e-47 194.5 341 43.7
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.2e-47 194.5 296 43.2
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 7.8e-47 191.8 352 43.8
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.0e-46 191.4 168 61.3
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 1.7e-46 190.7 350 42.6
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 2.3e-46 190.3 158 64.6
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 3.0e-46 189.9 338 44.1
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 3.9e-46 189.5 161 64.6
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 3.9e-46 189.5 304 43.1
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 5.0e-46 189.1 353 42.5
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 5.0e-46 189.1 159 64.2
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 5.0e-46 189.1 346 43.6
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 6.6e-46 188.7 324 44.4
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 8.6e-46 188.3 358 43.0
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 8.6e-46 188.3 148 65.5
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 1.1e-45 188.0 357 42.6
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 2.5e-45 186.8 253 48.2
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 3.3e-45 186.4 331 47.1
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 5.6e-45 185.7 160 63.8
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 9.5e-45 184.9 260 48.5
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 9.5e-45 184.9 142 66.2
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 1.2e-44 184.5 326 40.8
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 2.1e-44 183.7 345 44.1
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 2.8e-44 183.3 331 48.0
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 3.6e-44 183.0 159 60.4
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 3.6e-44 183.0 150 64.7
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 3.6e-44 183.0 159 59.7
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 4.7e-44 182.6 350 43.7
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.4e-43 181.0 148 63.5
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.3e-43 180.3 167 61.1
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 4.0e-43 179.5 337 43.3
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 5.2e-43 179.1 307 45.3
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 5.2e-43 179.1 345 39.4
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 8.9e-43 178.3 159 58.5
Atru.chr7.2280 Acer truncatum HOM05D006924 ORTHO05D008218 1.5e-42 177.6 113 83.2
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 2.0e-42 177.2 310 45.5
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 2.6e-42 176.8 159 59.7
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 2.6e-42 176.8 159 59.1
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 3.4e-42 176.4 166 62.7
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 4.4e-42 176.0 158 58.2
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 9.8e-42 174.9 160 58.1
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 1.7e-41 174.1 336 41.7
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 1.7e-41 174.1 371 38.3
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 1.7e-41 174.1 178 57.3
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 2.2e-41 173.7 166 57.8
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.9e-41 173.3 159 58.5
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 8.3e-41 171.8 321 37.1
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 8.3e-41 171.8 159 56.6
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 1.4e-40 171.0 160 57.5
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 1.9e-40 170.6 162 57.4
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 4.1e-40 169.5 178 56.2
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 6.0e-39 165.6 160 56.2
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 7.8e-39 165.2 337 40.7
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 1.0e-38 164.9 183 49.7
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 1.3e-38 164.5 261 42.1
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 3.0e-38 163.3 162 54.9
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 6.6e-38 162.2 159 55.3
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 8.6e-38 161.8 159 56.0
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 1.1e-37 161.4 339 45.7
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 1.9e-37 160.6 145 54.5
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 4.3e-37 159.5 250 46.0
CiPaw.08G012700 Carya illinoinensis HOM05D006924 ORTHO05D008218 6.8e-35 152.1 296 43.2
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 6.8e-35 152.1 159 52.2
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 9.9e-34 148.3 143 56.6
Haze_21546 Corylus avellana HOM05D006924 ORTHO05D008218 3.5e-31 139.8 334 39.2
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 6.0e-31 139.0 181 46.4
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 5.6e-29 132.5 115 59.1
Lj7C719T2 Lonicera japonica HOM05D006924 ORTHO05D008218 2.8e-28 130.2 123 61.0
PGR044G1352 Punica granatum HOM05D006924 ORTHO05D008218 3.6e-28 129.8 310 38.4
Atru.chr1.1063 Acer truncatum HOM05D006924 ORTHO05D008218 2.2e-25 120.6 84 82.1
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.8e-19 100.9 157 40.8
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 9.0e-19 98.6 143 42.0
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 1.4e-16 91.3 71 63.4
Haze_21544 Corylus avellana HOM05D006924 ORTHO05D008218 5.8e-10 69.3 49 65.3
TPR.G28713 Trifolium pratense HOM05D006924 ORTHO05D008218 8.4e-09 65.5 39 69.2
Nn2g11969 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.4e-08 64.7 140 37.1
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 3.2e-08 63.5 54 48.1
SEGI_32810 Sequoiadendron giganteum HOM05D006924 ORTHO05D008218 2.7e-07 60.5 213 29.1
Hma1.2p1_0000F.1_g000370 Hydrangea macrophylla HOM05D006924 ORTHO05D008218 6.7e-06 55.8 130 43.8


User provided reference genes

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