Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 3.2e-139 498.4 259 100.0
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.1e-73 280.8 264 56.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.4e-73 280.4 262 59.5
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 1.2e-72 277.3 264 60.2
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 2.0e-72 276.6 262 58.4
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 2.9e-71 272.7 249 57.8
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 8.4e-71 271.2 257 55.6
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 5.5e-70 268.5 245 56.7
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 7.1e-70 268.1 248 56.0
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 7.1e-70 268.1 261 55.2
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 3.5e-69 265.8 276 52.5
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 4.6e-69 265.4 242 56.6
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 4.6e-69 265.4 260 55.0
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.0e-68 264.2 249 55.8
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.8e-68 263.5 251 53.8
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 2.3e-68 263.1 266 53.4
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 3.9e-68 262.3 263 53.6
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 3.9e-68 262.3 249 55.4
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 3.9e-68 262.3 244 57.8
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 5.1e-68 261.9 270 53.3
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 4.3e-67 258.8 251 57.0
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 3.7e-66 255.8 257 55.6
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 4.8e-66 255.4 260 51.9
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 6.2e-66 255.0 265 54.0
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 8.2e-66 254.6 241 56.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.1e-65 254.2 243 56.0
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.4e-65 253.8 270 53.7
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 2.4e-65 253.1 246 54.9
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.4e-65 253.1 243 55.1
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 3.1e-65 252.7 241 57.3
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 3.1e-65 252.7 266 53.4
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 3.1e-65 252.7 267 52.4
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 5.3e-65 251.9 261 54.8
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 5.3e-65 251.9 243 56.8
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 6.9e-65 251.5 273 50.9
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 4.5e-64 248.8 251 52.6
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 4.5e-64 248.8 226 57.5
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 4.5e-64 248.8 269 50.6
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 7.6e-64 248.1 243 56.4
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 2.2e-63 246.5 238 55.5
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.2e-63 246.5 239 54.4
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.9e-62 243.4 245 54.3
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 2.5e-62 243.0 229 57.2
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.5e-62 243.0 265 52.5
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 3.2e-62 242.7 238 53.4
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.2e-62 242.7 238 53.4
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 4.2e-62 242.3 261 51.0
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 3.5e-61 239.2 248 53.6
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 7.9e-61 238.0 242 52.9
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.0e-60 237.7 218 57.3
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 6.7e-60 235.0 247 51.0
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.1e-59 234.2 266 51.9
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 3.3e-59 232.6 246 49.6
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 1.6e-58 230.3 258 53.1
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.6e-58 230.3 240 51.2
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 4.8e-58 228.8 240 51.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 6.3e-58 228.4 263 51.3
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.8e-57 226.9 217 50.2
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.2e-56 224.2 241 50.2
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 1.5e-56 223.8 233 51.1
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.0e-55 221.1 249 47.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.3e-55 220.7 226 50.9
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 1.7e-55 220.3 224 50.0
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 8.5e-55 218.0 238 47.1
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 8.5e-55 218.0 222 51.8
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.2e-54 215.7 242 47.9
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 4.2e-54 215.7 223 49.3
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 7.2e-54 214.9 221 52.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 9.4e-54 214.5 224 50.0
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.2e-53 214.2 239 49.0
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.0e-51 206.8 270 44.4
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.3e-51 206.1 236 47.5
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.3e-51 206.1 238 49.2
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 2.2e-50 203.4 272 43.4
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 1.4e-49 200.7 275 44.0
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.4e-49 199.9 239 45.2
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 3.1e-49 199.5 269 43.5
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 4.1e-49 199.1 275 42.9
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 4.1e-49 199.1 275 42.9
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 5.3e-49 198.7 275 42.9
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 5.3e-49 198.7 275 42.9
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 5.3e-49 198.7 275 42.9
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.0e-48 196.8 251 44.2
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 2.6e-48 196.4 223 45.7
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 3.4e-48 196.1 269 41.3
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 3.4e-48 196.1 223 45.7
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.9e-48 195.3 244 46.7
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.9e-48 195.3 247 44.9
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 7.7e-48 194.9 269 43.9
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 1.7e-47 193.7 249 49.0
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 1.1e-46 191.0 267 44.2
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 1.1e-46 191.0 219 45.2
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.4e-46 190.7 207 51.7
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.9e-46 190.3 236 43.2
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 4.2e-46 189.1 268 41.8
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 7.2e-46 188.3 266 42.9
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.6e-45 187.2 218 44.5
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.3e-44 183.3 240 41.2
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.1e-44 182.2 225 44.0
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 2.6e-43 179.9 203 45.3
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 4.1e-41 172.6 219 45.2
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.3e-39 167.5 240 39.6
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.4e-38 164.1 124 68.5
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 3.6e-37 159.5 220 42.7
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 8.0e-37 158.3 128 66.4
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 6.7e-36 155.2 216 41.2
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.1e-33 147.9 138 58.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.8e-33 147.1 138 58.7
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 3.1e-33 146.4 170 50.0
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 5.0e-31 139.0 210 39.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-30 136.3 215 38.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-28 130.6 210 37.1
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.4e-27 126.3 195 40.5
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-25 120.2 215 37.7
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 3.8e-23 112.8 223 34.1
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-22 109.4 219 35.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 4.2e-22 109.4 225 35.1
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 8.0e-21 105.1 157 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 6.8e-20 102.1 212 33.0
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 6.8e-20 102.1 241 29.9
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.5e-19 100.9 227 30.8
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 2.6e-19 100.1 259 32.0
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 7.5e-19 98.6 230 33.0
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 5.2e-12 75.9 78 41.0
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 8.9e-12 75.1 64 50.0
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 2.0e-11 73.9 55 56.4
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 3.4e-11 73.2 274 27.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.2e-09 66.6 102 37.3


User provided reference genes

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