Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-92 342.4 186 100.0
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-26 122.9 142 47.9
Atru.chr4.1966 Acer truncatum HOM05D004737 ORTHO05D052072 2.1e-23 113.2 75 73.3
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 6.1e-23 111.7 133 45.9
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-16 89.4 147 36.7
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-15 86.3 146 39.0
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-15 86.3 146 36.3
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.8e-15 86.3 146 36.3
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.4e-14 84.0 146 34.9
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.8e-14 83.6 145 37.2
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-13 80.9 151 37.7
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.2e-13 80.9 147 36.7
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.0e-13 80.1 146 33.6
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.6e-13 79.7 146 35.6
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.6e-13 79.7 146 33.6
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 3.4e-13 79.3 145 33.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.4e-13 79.3 146 34.2
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 4.4e-13 79.0 146 33.6
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-13 78.6 151 37.1
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 5.8e-13 78.6 146 34.2
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 5.8e-13 78.6 146 34.9
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 5.8e-13 78.6 146 33.6
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-13 78.2 157 33.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 7.5e-13 78.2 147 34.7
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 7.5e-13 78.2 146 33.6
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 7.5e-13 78.2 146 33.6
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 9.8e-13 77.8 146 32.9
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.3e-12 77.4 146 34.2
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.3e-12 77.4 146 32.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.3e-12 77.4 148 35.8
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.9e-12 76.3 146 34.9
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 3.7e-12 75.9 146 32.9
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 4.9e-12 75.5 147 34.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 4.9e-12 75.5 147 33.3
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.9e-12 75.5 148 33.8
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 6.4e-12 75.1 143 32.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 6.4e-12 75.1 146 33.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 8.3e-12 74.7 146 32.9
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.1e-11 74.3 139 34.5
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.4e-11 73.9 146 32.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.4e-11 73.9 146 32.9
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.4e-11 73.9 146 32.9
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.9e-11 73.6 145 33.1
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.9e-11 73.6 146 32.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.4e-11 73.2 146 34.9
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-11 72.4 138 36.2
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.1e-11 72.4 146 32.9
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 4.1e-11 72.4 146 32.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 5.4e-11 72.0 146 34.2
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 7.0e-11 71.6 146 32.9
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 7.0e-11 71.6 147 33.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 7.0e-11 71.6 146 34.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 7.0e-11 71.6 147 33.3
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 9.2e-11 71.2 119 35.3
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 9.2e-11 71.2 146 33.6
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.2e-10 70.9 120 33.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.2e-10 70.9 149 32.9
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.2e-10 70.9 136 33.1
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.6e-10 70.5 119 35.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.6e-10 70.5 146 32.2
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.0e-10 70.1 146 32.2
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.7e-10 69.7 147 34.0
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.5e-10 69.3 146 32.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 3.5e-10 69.3 146 32.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 6.0e-10 68.6 146 31.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 6.0e-10 68.6 146 33.6
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 6.0e-10 68.6 146 32.2
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 7.8e-10 68.2 146 31.5
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 1.3e-09 67.4 139 33.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.3e-09 67.4 147 32.7
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.3e-09 67.4 145 33.8
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.3e-09 67.4 146 30.1
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.3e-09 67.4 146 31.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.3e-09 67.4 146 29.5
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.3e-09 67.4 145 30.3
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.7e-09 67.0 146 31.5
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 2.3e-09 66.6 146 30.8
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.9e-09 65.9 146 30.8
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 3.9e-09 65.9 146 30.8
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 3.9e-09 65.9 146 31.5
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-09 65.5 162 29.0
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 5.0e-09 65.5 146 30.8
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 5.0e-09 65.5 145 34.5
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-09 65.1 162 32.1
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 6.6e-09 65.1 146 30.1
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 6.6e-09 65.1 146 30.1
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 6.6e-09 65.1 146 30.1
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 6.6e-09 65.1 146 30.8
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 8.6e-09 64.7 146 30.8
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-08 64.3 146 30.1
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-08 64.3 146 30.1
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.1e-08 64.3 146 29.5
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-08 63.9 145 30.3
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.9e-08 63.5 146 30.1
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.9e-08 63.5 146 30.1
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.9e-08 63.5 153 30.7
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-08 62.8 162 29.0
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.3e-08 62.8 146 29.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 3.3e-08 62.8 146 29.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 3.3e-08 62.8 146 29.5
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 3.3e-08 62.8 170 31.8
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.3e-08 62.4 146 32.9
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 5.6e-08 62.0 146 30.8
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 5.6e-08 62.0 145 31.7
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 9.5e-08 61.2 146 29.5
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 9.5e-08 61.2 146 29.5
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.6e-07 60.5 145 30.3
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.8e-07 59.7 146 30.1
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-07 58.9 139 30.2
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-07 58.2 145 26.9
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-06 57.8 181 26.0
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.1e-06 57.8 119 31.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 2.3e-06 56.6 146 30.8


User provided reference genes

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