Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 3.4e-211 738.0 359 100.0
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 2.9e-194 681.8 355 91.0
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 7.8e-192 673.7 358 88.3
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 5.1e-191 671.0 357 88.5
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 5.1e-191 671.0 358 88.3
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.9e-190 669.1 357 87.7
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 4.3e-190 667.9 354 88.4
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 5.6e-190 667.5 358 87.2
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.6e-189 666.0 358 87.2
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.1e-189 665.6 358 87.4
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 4.7e-189 664.5 357 87.1
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 8.1e-189 663.7 358 86.9
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.4e-188 662.9 357 87.4
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 4.0e-188 661.4 357 86.8
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.5e-187 659.4 358 87.4
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 2.6e-187 658.7 355 87.0
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.4e-187 657.9 358 86.0
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 5.8e-187 657.5 355 86.2
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 9.9e-187 656.8 358 86.3
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.7e-186 656.0 358 86.0
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.7e-186 656.0 358 86.0
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 1.7e-186 656.0 369 85.1
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 2.2e-186 655.6 358 86.6
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 2.9e-186 655.2 359 85.5
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 2.9e-186 655.2 355 86.8
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 3.8e-186 654.8 359 86.1
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 3.8e-186 654.8 358 84.9
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.4e-186 653.7 357 86.3
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 1.9e-185 652.5 358 86.3
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 4.1e-185 651.4 358 85.2
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 9.2e-185 650.2 358 84.1
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 1.2e-184 649.8 357 86.6
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.7e-184 648.7 357 86.8
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 2.7e-184 648.7 357 85.4
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 3.5e-184 648.3 359 85.0
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 3.5e-184 648.3 359 85.0
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 4.6e-184 647.9 355 86.8
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.8e-184 647.1 357 85.4
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 1.0e-183 646.7 361 85.3
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 1.7e-183 646.0 357 86.0
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 1.7e-183 646.0 357 86.0
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 1.7e-183 646.0 357 84.9
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 2.3e-183 645.6 358 84.4
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 5.1e-183 644.4 358 86.0
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 5.1e-183 644.4 358 86.6
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 6.6e-183 644.0 359 85.2
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 8.7e-183 643.7 379 81.3
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.5e-182 642.9 355 84.5
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 1.9e-182 642.5 360 83.9
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 2.5e-182 642.1 356 85.7
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 3.3e-182 641.7 356 84.3
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 9.6e-182 640.2 356 85.4
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.2e-181 639.8 354 85.3
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.1e-181 639.0 372 81.5
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 2.1e-181 639.0 357 84.3
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 3.6e-181 638.3 357 84.3
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 4.7e-181 637.9 356 84.0
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 6.2e-181 637.5 356 85.1
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 1.1e-180 636.7 355 85.1
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.1e-180 636.7 357 84.9
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 2.4e-180 635.6 356 83.7
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 9.0e-180 633.6 354 83.3
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 5.8e-179 630.9 357 83.5
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 2.9e-178 628.6 355 82.3
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 4.9e-178 627.9 355 82.5
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 8.4e-178 627.1 359 81.6
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 8.4e-178 627.1 357 81.8
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 8.4e-178 627.1 357 81.5
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 1.4e-177 626.3 356 81.7
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.9e-177 625.9 357 81.5
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 2.4e-177 625.5 376 80.9
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 2.4e-177 625.5 367 81.5
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 5.4e-177 624.4 354 82.5
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 5.4e-177 624.4 365 81.4
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 5.4e-177 624.4 351 82.6
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 2.7e-176 622.1 362 81.8
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 2.7e-176 622.1 366 80.6
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 4.6e-176 621.3 355 81.4
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 6.0e-176 620.9 360 81.4
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 3.0e-175 618.6 366 80.3
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 3.9e-175 618.2 351 82.6
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 8.7e-175 617.1 350 82.3
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 2.5e-174 615.5 358 81.6
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.6e-173 612.8 370 79.5
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.1e-173 612.5 356 81.7
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 2.1e-173 612.5 356 80.1
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 4.8e-173 611.3 358 80.4
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 6.2e-173 610.9 357 78.7
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 6.2e-173 610.9 358 81.3
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.4e-172 609.8 367 80.4
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.4e-172 609.0 378 77.2
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 6.9e-172 607.4 358 79.6
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 9.0e-172 607.1 374 75.7
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 7.6e-171 604.0 377 77.5
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 7.6e-171 604.0 358 78.5
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 1.3e-170 603.2 358 80.4
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.4e-170 600.9 368 78.3
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 3.2e-169 598.6 357 81.0
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.2e-169 598.2 367 77.9
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 9.3e-169 597.0 351 81.2
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 9.3e-169 597.0 339 82.0
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 5.6e-166 587.8 348 80.7
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 1.6e-165 586.3 357 80.7
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 3.7e-165 585.1 365 76.2
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 4.8e-165 584.7 365 75.9
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 1.1e-164 583.6 356 78.1
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.4e-164 583.2 353 78.5
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 2.0e-163 579.3 355 75.8
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.4e-161 573.2 357 76.8
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 2.4e-161 572.4 351 75.8
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.6e-160 569.7 357 77.6
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.8e-159 566.2 354 75.7
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.9e-159 565.1 351 74.4
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.1e-158 563.5 347 75.5
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 2.6e-155 552.4 356 74.7
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 7.6e-155 550.8 296 86.1
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 3.8e-154 548.5 356 73.9
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 9.3e-153 543.9 356 69.9
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 3.5e-152 542.0 353 70.8
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.6e-152 541.6 431 64.5
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 3.0e-151 538.9 358 72.6
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.7e-151 537.7 365 72.9
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 2.5e-150 535.8 349 70.2
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 5.7e-150 534.6 279 90.0
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 7.4e-150 534.3 371 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.1e-148 530.4 357 68.9
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.8e-148 529.6 357 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.2e-141 504.2 384 63.0
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.7e-138 496.5 290 79.0
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 3.0e-135 485.7 348 65.5
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 1.4e-132 476.9 351 63.8
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 5.0e-130 468.4 238 92.0
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 6.5e-130 468.0 356 65.2
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 4.2e-129 465.3 715 40.4
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 5.5e-129 464.9 310 69.4
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 6.3e-125 451.4 330 60.9
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 3.0e-119 432.6 267 77.2
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 2.0e-110 403.3 348 55.5
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 9.1e-108 394.4 239 77.4
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.8e-103 380.2 334 58.4
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 1.0e-95 354.4 251 63.7
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 1.4e-95 354.0 216 75.9
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 4.0e-95 352.4 357 52.4
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 2.4e-84 316.6 202 75.2
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 3.0e-82 309.7 290 57.6
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 6.0e-51 205.7 146 68.5
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 1.2e-46 191.4 123 78.9
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 2.0e-46 190.7 123 78.0
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 2.6e-46 190.3 100 89.0
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 2.6e-46 190.3 123 78.0
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 4.5e-46 189.5 119 80.7
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 1.4e-44 184.5 114 76.3
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 2.1e-43 180.6 122 74.6
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.7e-42 175.3 95 90.5
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.9e-41 174.1 170 51.2
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 6.2e-40 169.1 129 65.9
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.8e-38 162.5 98 75.5
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 5.7e-33 146.0 124 61.3
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.8e-32 142.9 111 60.4
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 1.1e-25 121.7 69 84.1
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 4.1e-23 113.2 69 78.3
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 6.9e-23 112.5 64 81.2
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 9.1e-23 112.1 64 84.4
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.1e-19 100.9 61 80.3
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 7.9e-19 99.0 65 69.2
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 4.4e-17 93.2 84 57.1
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.0e-14 84.3 124 45.2
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 9.4e-12 75.5 62 58.1
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 1.6e-11 74.7 49 65.3
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 1.4e-07 61.6 41 68.3
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 3.5e-06 57.0 31 87.1


User provided reference genes

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