Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 2.6e-176 622.1 350 100.0
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 5.3e-145 518.1 349 77.1
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.0e-140 503.8 349 75.9
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 5.7e-139 498.0 351 74.1
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 9.8e-139 497.3 355 73.2
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 5.0e-135 485.0 353 73.1
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 6.5e-135 484.6 349 74.5
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.9e-134 483.0 354 71.8
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 7.2e-134 481.1 349 72.8
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 2.1e-133 479.6 352 78.1
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.4e-132 476.9 349 72.5
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 8.9e-132 474.2 349 71.9
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 8.9e-132 474.2 349 71.6
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 1.2e-131 473.8 356 71.1
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.5e-131 473.4 351 70.4
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 7.5e-131 471.1 358 79.1
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 9.8e-131 470.7 324 76.9
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 4.9e-130 468.4 351 71.2
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 3.5e-128 462.2 359 69.1
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 5.9e-128 461.5 348 69.5
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.0e-127 460.7 304 88.8
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.0e-127 460.7 355 68.7
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 1.0e-127 460.7 326 73.3
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.3e-127 460.3 356 78.4
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.8e-127 458.8 351 68.4
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 5.0e-127 458.4 306 76.8
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 5.0e-127 458.4 306 76.8
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 6.6e-127 458.0 357 75.4
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 6.6e-127 458.0 354 69.2
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.1e-126 457.2 354 69.5
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.5e-126 456.8 349 71.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 2.5e-126 456.1 351 75.8
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 3.3e-126 455.7 357 69.2
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 4.3e-126 455.3 352 76.7
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 7.3e-126 454.5 357 68.3
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 2.1e-125 453.0 349 66.5
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 6.1e-125 451.4 358 68.4
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 6.1e-125 451.4 357 67.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.0e-124 450.7 355 67.9
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.8e-124 449.9 322 74.2
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 4.0e-124 448.7 355 68.5
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 4.0e-124 448.7 351 76.1
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.8e-124 448.0 352 76.1
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 8.9e-124 447.6 352 76.1
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.5e-123 446.8 357 68.1
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 1.5e-123 446.8 357 68.1
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 2.6e-123 446.0 302 77.5
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.6e-123 446.0 301 84.7
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 2.6e-123 446.0 352 75.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 3.4e-123 445.7 315 73.7
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 4.9e-122 441.8 360 74.4
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.9e-122 441.8 352 75.9
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 4.9e-122 441.8 314 82.2
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 6.4e-122 441.4 372 65.6
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 6.4e-122 441.4 367 65.9
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 8.3e-122 441.0 362 66.6
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.4e-121 440.3 307 75.2
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.9e-121 439.9 348 68.7
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 4.1e-121 438.7 365 66.3
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 7.0e-121 438.0 347 75.8
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.2e-120 437.2 350 64.0
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 2.0e-120 436.4 307 74.3
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 2.0e-120 436.4 338 76.0
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 7.8e-120 434.5 356 67.1
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 7.8e-120 434.5 355 67.0
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.1e-118 430.6 318 71.4
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.5e-118 430.3 309 72.8
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.9e-118 429.9 355 62.8
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 7.3e-118 427.9 315 71.1
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.6e-117 426.8 300 73.0
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 2.1e-117 426.4 350 62.9
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 3.6e-117 425.6 338 66.3
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 3.6e-117 425.6 300 73.0
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 3.6e-117 425.6 351 66.4
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 8.0e-117 424.5 345 65.8
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 1.8e-116 423.3 321 72.0
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.8e-116 423.3 345 74.5
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.8e-116 423.3 354 72.9
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 4.0e-116 422.2 349 62.2
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.2e-116 421.8 352 65.9
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 5.2e-116 421.8 354 72.6
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 8.9e-116 421.0 302 72.8
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 8.9e-116 421.0 349 62.2
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 3.4e-115 419.1 352 62.2
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 5.8e-115 418.3 350 62.3
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 5.8e-115 418.3 350 62.3
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 5.8e-115 418.3 353 65.7
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 7.5e-115 417.9 316 70.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 9.8e-115 417.5 353 62.6
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 1.3e-114 417.2 350 62.0
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.1e-113 414.1 321 77.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.4e-113 413.7 350 62.9
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 1.9e-113 413.3 357 65.3
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 3.2e-113 412.5 316 68.0
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 7.0e-113 411.4 303 70.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 2.1e-112 409.8 316 67.7
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 2.1e-112 409.8 351 71.8
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.7e-112 409.5 352 62.2
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.3e-111 407.1 299 80.9
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 3.9e-111 405.6 352 62.5
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 3.9e-111 405.6 297 75.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.5e-110 402.9 352 71.9
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.6e-109 400.2 294 80.3
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 3.4e-107 392.5 290 69.0
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.1e-105 387.5 321 65.7
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 1.1e-105 387.5 291 68.4
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 9.2e-105 384.4 271 72.3
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 5.1e-103 378.6 351 63.0
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 5.1e-103 378.6 326 64.7
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 1.3e-95 354.0 316 61.1
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 2.1e-93 346.7 296 61.1
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 2.4e-92 343.2 328 58.8
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.2e-91 340.9 289 63.0
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 1.7e-90 337.0 257 68.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 8.4e-90 334.7 356 57.3
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 2.1e-88 330.1 264 63.3
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 4.6e-88 328.9 290 60.0
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 6.0e-88 328.6 293 60.8
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 5.1e-87 325.5 268 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 2.1e-80 303.5 245 64.9
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 9.9e-75 284.6 252 58.3
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.5e-70 270.0 252 56.3
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 9.0e-68 261.5 177 80.8
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 2.1e-64 250.4 146 88.4
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.1e-60 238.0 273 49.1
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.8e-60 237.3 289 51.9
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 7.4e-54 215.3 195 57.9
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.6e-51 206.8 145 72.4
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 3.7e-45 186.4 103 92.2
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 1.8e-36 157.5 100 83.0
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 1.8e-36 157.5 100 83.0
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 2.9e-34 150.2 103 68.9
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 2.0e-30 137.5 87 72.4
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 6.3e-21 105.9 61 83.6
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.2e-13 80.9 225 32.0
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 1.3e-10 71.6 43 74.4
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 2.8e-08 63.9 192 24.5


User provided reference genes

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