Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 9.2e-65 250.0 119 100.0
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 9.2e-65 250.0 119 100.0
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 4.2e-57 224.6 119 92.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-52 207.6 103 97.1
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-31 137.5 108 64.8
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 4.5e-19 98.2 116 50.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-19 97.8 112 51.8
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-17 92.0 107 45.8
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-16 89.4 120 40.8
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 4.6e-16 88.2 116 44.8
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.4e-15 86.7 111 46.8
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.4e-15 86.7 109 46.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.8e-15 86.3 109 45.9
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.0e-15 85.5 109 45.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.0e-15 85.5 109 45.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.0e-15 85.5 114 46.5
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 6.7e-15 84.3 111 46.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 6.7e-15 84.3 111 45.9
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 8.8e-15 84.0 111 45.9
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 8.8e-15 84.0 106 47.2
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.1e-14 83.6 118 41.5
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-14 83.2 116 40.5
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.5e-14 83.2 110 47.3
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.0e-14 82.8 115 42.6
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-14 82.4 118 44.1
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.5e-14 82.4 115 46.1
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.5e-14 82.4 118 43.2
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 3.3e-14 82.0 106 46.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 4.3e-14 81.6 114 43.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 5.7e-14 81.3 111 42.3
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.7e-14 81.3 111 43.2
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.7e-14 81.3 111 43.2
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 5.7e-14 81.3 111 44.1
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 7.4e-14 80.9 111 42.3
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 7.4e-14 80.9 110 47.3
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 9.7e-14 80.5 111 43.2
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 9.7e-14 80.5 112 46.4
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-13 80.1 125 38.4
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.7e-13 79.7 111 45.0
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.7e-13 79.7 116 44.0
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 2.8e-13 79.0 111 43.2
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.8e-13 79.0 112 44.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.8e-13 79.0 115 44.3
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.8e-13 79.0 122 41.0
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 3.7e-13 78.6 111 45.0
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 3.7e-13 78.6 118 39.8
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 4.8e-13 78.2 111 43.2
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 6.3e-13 77.8 115 41.7
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 6.3e-13 77.8 114 43.0
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.1e-12 77.0 111 39.6
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.1e-12 77.0 111 39.6
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.1e-12 77.0 122 40.2
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.1e-12 77.0 105 45.7
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-12 76.6 127 39.4
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.4e-12 76.6 111 43.2
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.8e-12 76.3 111 39.6
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 4.1e-12 75.1 117 41.0
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 5.3e-12 74.7 114 39.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 2.0e-11 72.8 117 42.7
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 2.0e-11 72.8 103 47.6
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 2.0e-11 72.8 103 47.6
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.0e-11 72.8 111 36.9
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 2.6e-11 72.4 114 39.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.4e-11 72.0 100 42.0
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.4e-11 72.0 116 37.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 7.7e-11 70.9 114 38.6
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.0e-10 70.5 90 46.7
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.3e-10 70.1 113 39.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.3e-10 70.1 115 40.0
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.7e-10 69.7 116 38.8
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.9e-10 68.9 116 40.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.8e-10 68.6 112 41.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 3.8e-10 68.6 112 41.1
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 5.0e-10 68.2 103 40.8
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 8.5e-10 67.4 116 37.9
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.1e-09 67.0 115 38.3
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.4e-09 66.6 111 39.6
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.4e-09 66.6 119 40.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.4e-09 66.6 111 39.6
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.9e-09 66.2 111 38.7
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-09 65.5 116 37.9
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.2e-09 65.5 116 37.9
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.2e-09 65.5 111 39.6
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 4.2e-09 65.1 116 37.1
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 4.2e-09 65.1 115 39.1
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 4.2e-09 65.1 111 39.6
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.2e-09 65.1 116 37.1
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 5.5e-09 64.7 116 37.1
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 5.5e-09 64.7 116 37.1
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 5.5e-09 64.7 116 37.1
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 5.5e-09 64.7 116 37.1
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 5.5e-09 64.7 116 37.1
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 7.2e-09 64.3 116 37.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 7.2e-09 64.3 117 36.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 9.4e-09 63.9 72 47.2
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.2e-08 63.5 113 38.1
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.2e-08 63.5 113 38.1
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.2e-08 63.5 112 41.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.2e-08 63.5 111 35.1
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.6e-08 63.2 113 38.1
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.6e-08 63.2 116 37.1
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-08 62.8 113 38.1
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 2.1e-08 62.8 116 36.2
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 2.1e-08 62.8 117 37.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 2.7e-08 62.4 111 34.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.7e-08 62.4 116 37.1
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-08 62.0 116 33.6
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 4.7e-08 61.6 116 35.3
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 4.7e-08 61.6 116 36.2
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 6.1e-08 61.2 107 37.4
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.0e-07 60.5 135 34.1
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.4e-07 60.1 103 38.8
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.8e-07 59.7 66 53.0
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.3e-07 59.3 103 37.9
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-07 57.4 109 32.1
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-06 57.0 106 33.0
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-06 56.2 108 32.4
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-06 55.5 121 29.8


User provided reference genes

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