Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.462 Acer truncatum HOM05D001129 ORTHO05D037904 3.7e-163 578.2 296 100.0
Atru.chr5.2848 Acer truncatum HOM05D027227 ORTHO05D037904 1.9e-18 97.4 114 50.9
CiPaw.09G037700 Carya illinoinensis HOM05D001129 ORTHO05D003157 1.3e-14 84.7 46 87.0
Gohir.A01G131400 Gossypium hirsutum HOM05D001129 ORTHO05D003157 3.7e-14 83.2 46 87.0
Gohir.D01G120700 Gossypium hirsutum HOM05D001129 ORTHO05D003157 3.7e-14 83.2 46 87.0
Gorai.002G147300 Gossypium raimondii HOM05D001129 ORTHO05D003157 3.7e-14 83.2 46 87.0
Gorai.002G147500 Gossypium raimondii HOM05D001129 ORTHO05D003157 1.1e-13 81.6 46 84.8
Manes.08G050900 Manihot esculenta HOM05D001129 ORTHO05D003157 3.1e-13 80.1 46 84.8
Atru.chr1.1085 Acer truncatum HOM05D001129 ORTHO05D003157 4.1e-13 79.7 46 82.6
Ciclev10004240m.g Citrus clementina HOM05D001129 ORTHO05D003157 5.4e-13 79.3 46 82.6
Dinv39598 Davidia involucrata HOM05D001129 ORTHO05D003157 5.4e-13 79.3 46 82.6
ECA247G0911 Erigeron canadensis HOM05D001129 ORTHO05D003157 5.4e-13 79.3 46 82.6
SGA_v2.0_scaffold69G23113 Striga asiatica HOM05D001129 ORTHO05D003157 5.4e-13 79.3 46 82.6
CSS0019735 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003157 7.0e-13 79.0 46 82.6
PSO339G2454 Papaver somniferum HOM05D001129 ORTHO05D003157 7.0e-13 79.0 46 82.6
PGR004G1628 Punica granatum HOM05D001129 ORTHO05D003157 7.0e-13 79.0 46 82.6
Carub.0004s0428 Capsella rubella HOM05D001129 ORTHO05D003157 9.2e-13 78.6 46 82.6
Manes.09G021500 Manihot esculenta HOM05D001129 ORTHO05D003157 9.2e-13 78.6 55 70.9
Potri.006G050700 Populus trichocarpa HOM05D001129 ORTHO05D003157 9.2e-13 78.6 55 69.1
Thecc.05G154200 Theobroma cacao HOM05D001129 ORTHO05D003157 9.2e-13 78.6 46 82.6
Duzib128G1487 Durio zibethinus HOM05D001129 ORTHO05D003157 1.2e-12 78.2 55 70.9
Os07g0570300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003157 1.2e-12 78.2 55 67.3
TWI74G0219 Tripterygium wilfordii HOM05D001129 ORTHO05D003157 1.2e-12 78.2 46 82.6
Actinidia09336 Actinidia chinensis HOM05D001129 ORTHO05D003157 1.6e-12 77.8 46 80.4
AL5G39030 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 1.6e-12 77.8 46 80.4
Lsat_1_v5_gn_9_28860 Lactuca sativa HOM05D001129 ORTHO05D003157 1.6e-12 77.8 46 80.4
Lj2C384T6 Lonicera japonica HOM05D001129 ORTHO05D003157 1.6e-12 77.8 46 80.4
Cpa.g.sc92.47 Carica papaya HOM05D001129 ORTHO05D003157 2.0e-12 77.4 46 80.4
Lj1g0001320 Lotus japonicus HOM05D001129 ORTHO05D003157 2.0e-12 77.4 46 80.4
SalBow6G0410 Salvia bowleyana HOM05D001129 ORTHO05D003157 2.0e-12 77.4 46 80.4
BcaC07g40376 Brassica carinata HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
A09p50340 Brassica napus HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
BraA09t40487Z Brassica rapa HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Ca_08459_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Ca_30053_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
DCAR_020490 Daucus carota HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Glyma.03G137100 Glycine max HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 82.6
Glyma.19G139800 Glycine max HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 82.6
MD12G1073300 Malus domestica HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Medtr7g091590 Medicago truncatula HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Psat3g072640 Pisum sativum HOM05D001129 ORTHO05D003157 2.7e-12 77.0 46 80.4
Aa31LG1G23800 Aethionema arabicum HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
BcaNung02836 Brassica carinata HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
Thhalv10016187m.g Eutrema salsugineum HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
HanXRQChr10g0289411 Helianthus annuus HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 78.3
Nn7g36265 Nelumbo nucifera HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
Sp4g24050 Schrenkiella parvula HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
THA.LOC104802114 Tarenaya hassleriana HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 80.4
GSVIVG01033283001 Vitis vinifera HOM05D001129 ORTHO05D003157 3.5e-12 76.6 46 78.3
Aa31LG10G12300 Aethionema arabicum HOM05D001129 ORTHO05D003157 4.5e-12 76.3 46 80.4
Aa31LG10G12310 Aethionema arabicum HOM05D001129 ORTHO05D003157 4.5e-12 76.3 46 80.4
Nn7g36269 Nelumbo nucifera HOM05D001129 ORTHO05D003157 4.5e-12 76.3 46 80.4
Sabra06G0035400 Salix brachista HOM05D001129 ORTHO05D003157 4.5e-12 76.3 55 69.1
vmacro07856 Vaccinium macrocarpon HOM05D001129 ORTHO05D003157 4.5e-12 76.3 46 78.3
GSVIVG01033284001 Vitis vinifera HOM05D001129 ORTHO05D003157 4.5e-12 76.3 46 76.1
C08p33010 Brassica napus HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 80.4
BolC8t50901H Brassica oleracea HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 80.4
CARHR167690 Cardamine hirsuta HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 80.4
FAN05G4515 Fragaria x ananassa HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 80.4
Lju124C40G7 Lonicera japonica HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 80.4
TAR633G2160 Trochodendron aralioides HOM05D001129 ORTHO05D003157 5.9e-12 75.9 46 76.1
Nitab4.5_0000733g0050 Nicotiana tabacum HOM05D001129 ORTHO05D003157 7.8e-12 75.5 46 78.3
AL4G40110 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
AT2G41790 Arabidopsis thaliana HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
BcaC02g12494 Brassica carinata HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
A05p02530 Brassica napus HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
BolC4t21939H Brassica oleracea HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
BraA05t19246Z Brassica rapa HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
Carub.0004s2406 Capsella rubella HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
Migut.J01762 Erythranthe guttata HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 76.1
MD14G1071400 Malus domestica HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
PGR004G1988 Punica granatum HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
RcHm_v2.0_Chr3g0481841 Rosa chinensis HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
RcHm_v2.0_Chr3g0482151 Rosa chinensis HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
Sp5g05130 Schrenkiella parvula HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
Solyc04g015680.3 Solanum lycopersicum HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
Sopen04g007760 Solanum pennellii HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
PGSC0003DMG400027247 Solanum tuberosum HOM05D001129 ORTHO05D003157 1.0e-11 75.1 46 78.3
C04p02990 Brassica napus HOM05D001129 ORTHO05D003157 1.3e-11 74.7 46 78.3
Haze_19863 Corylus avellana HOM05D001129 ORTHO05D003157 1.3e-11 74.7 48 79.2
Prupe.7G061600 Prunus persica HOM05D001129 ORTHO05D003157 1.3e-11 74.7 46 78.3
Carub.0005s2431 Capsella rubella HOM05D001129 ORTHO05D003157 1.7e-11 74.3 46 76.1
FvH4_6g23690 Fragaria vesca HOM05D001129 ORTHO05D003157 1.7e-11 74.3 46 78.3
VMungo1383G1826 Vigna mungo HOM05D001129 ORTHO05D003157 1.7e-11 74.3 46 78.3
BcaC08g44846 Brassica carinata HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
C06p24530 Brassica napus HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
BolC6t37601H Brassica oleracea HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
CAN.G676.66 Capsicum annuum HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 76.1
Dinv00382 Davidia involucrata HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
Dinv39591 Davidia involucrata HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
Eucgr.A02359 Eucalyptus grandis HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 73.9
Nitab4.5_0005611g0040 Nicotiana tabacum HOM05D001129 ORTHO05D003157 2.3e-11 73.9 46 76.1
CiPaw.10G033100 Carya illinoinensis HOM05D001129 ORTHO05D003157 2.9e-11 73.6 46 78.3
ClCG10G016980 Citrullus lanatus HOM05D001129 ORTHO05D003157 2.9e-11 73.6 46 73.9
CsaV3_3G039410 Cucumis sativus L. HOM05D001129 ORTHO05D003157 2.9e-11 73.6 46 73.9
Zm00001eb324850 Zea mays HOM05D001129 ORTHO05D003157 2.9e-11 73.6 58 63.8
FAN02G2306 Fragaria x ananassa HOM05D001129 ORTHO05D003157 3.8e-11 73.2 46 76.1
MELO3C009685.2 Cucumis melo HOM05D001129 ORTHO05D003157 5.0e-11 72.8 46 73.9
MBI02_g23135_MAGBIO Magnolia biondii HOM05D001129 ORTHO05D003157 5.0e-11 72.8 46 76.1
Phvul.001G133200 Phaseolus vulgaris HOM05D001129 ORTHO05D003157 5.0e-11 72.8 46 76.1
Aqoxy1G00256 Aquilegia oxysepala HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 76.1
arahy.Tifrunner.gnm1.ann1.F2WDVD Arachis hypogaea HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 76.1
arahy.Tifrunner.gnm1.ann1.V41UA4 Arachis hypogaea HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 76.1
EL10Ac3g07087 Beta vulgaris HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 73.9
CANSAT80G2109 Cannabis sativa HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 76.1
Hund24708 Selenicereus undatus HOM05D001129 ORTHO05D003157 6.6e-11 72.4 46 76.1
TAR636G3238 Trochodendron aralioides HOM05D001129 ORTHO05D003157 8.6e-11 72.0 46 76.1
Ciclev10004250m.g Citrus clementina HOM05D001129 ORTHO05D003157 1.1e-10 71.6 46 76.1
HPP92_015932 Vanilla planifolia HOM05D001129 ORTHO05D003157 1.1e-10 71.6 46 73.9
Ah.04g151760 Amaranthus hybridus HOM05D001129 ORTHO05D003157 1.5e-10 71.2 41 82.9
ATR0332G094 Amborella trichopoda HOM05D001129 ORTHO05D003157 1.5e-10 71.2 46 73.9
AUR62024444 Chenopodium quinoa HOM05D001129 ORTHO05D003157 1.5e-10 71.2 46 73.9
Cc06_g17050 Coffea canephora HOM05D001129 ORTHO05D003157 1.5e-10 71.2 46 73.9
Gohir.A11G213700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.5e-10 71.2 41 82.9
Lalb_Chr01g0017291 Lupinus albus HOM05D001129 ORTHO05D003157 1.9e-10 70.9 46 71.7
Psat4g066560 Pisum sativum HOM05D001129 ORTHO05D003157 1.9e-10 70.9 60 61.7
BcaB02g07601 Brassica carinata HOM05D001129 ORTHO05D003157 2.5e-10 70.5 46 76.1
Rhsim03G0021400 Rhododendron simsii HOM05D001129 ORTHO05D003157 2.5e-10 70.5 46 71.7
Thhalv10005770m.g Eutrema salsugineum HOM05D001129 ORTHO05D003157 3.3e-10 70.1 46 76.1
AL5G39040 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 5.6e-10 69.3 55 63.6
AT3G57470 Arabidopsis thaliana HOM05D001129 ORTHO05D003157 5.6e-10 69.3 46 71.7
Hma1.2p1_1168F.1_g263190 Hydrangea macrophylla HOM05D001129 ORTHO05D003157 5.6e-10 69.3 46 73.9
PGR004G1973 Punica granatum HOM05D001129 ORTHO05D003157 5.6e-10 69.3 46 71.7
Sed0017574 Sechium edule HOM05D001129 ORTHO05D003157 5.6e-10 69.3 46 69.6
AL5G39050 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 7.3e-10 68.9 46 71.7
RcHm_v2.0_Chr3g0482171 Rosa chinensis HOM05D001129 ORTHO05D003157 7.3e-10 68.9 46 71.7
THA.LOC104824443 Tarenaya hassleriana HOM05D001129 ORTHO05D003157 7.3e-10 68.9 46 76.1
vmacro07861 Vaccinium macrocarpon HOM05D001129 ORTHO05D003157 7.3e-10 68.9 46 69.6
vmacro22459 Vaccinium macrocarpon HOM05D001129 ORTHO05D003157 7.3e-10 68.9 46 69.6
Gorai.012G121300 Gossypium raimondii HOM05D001129 ORTHO05D003157 9.5e-10 68.6 39 87.2
Manes.09G021401 Manihot esculenta HOM05D001129 ORTHO05D003157 9.5e-10 68.6 46 69.6
Cc06_g17060 Coffea canephora HOM05D001129 ORTHO05D003157 1.6e-09 67.8 46 71.7
Gohir.A01G131500 Gossypium hirsutum HOM05D001129 ORTHO05D003157 2.8e-09 67.0 46 73.9
CDE05G3167 Ceratophyllum demersum HOM05D001129 ORTHO05D003157 3.6e-09 66.6 46 69.6
BcaB02g07602 Brassica carinata HOM05D001129 ORTHO05D003157 4.7e-09 66.2 46 71.7
CARHR167670 Cardamine hirsuta HOM05D001129 ORTHO05D003157 6.1e-09 65.9 46 71.7
A04p03100 Brassica napus HOM05D001129 ORTHO05D003157 8.0e-09 65.5 46 69.6
BraA04t16033Z Brassica rapa HOM05D001129 ORTHO05D003157 8.0e-09 65.5 46 69.6
Carub.0005s2430 Capsella rubella HOM05D001129 ORTHO05D003157 1.0e-08 65.1 46 71.7
TPR.G36357 Trifolium pratense HOM05D001129 ORTHO05D003157 1.0e-08 65.1 35 88.6
Eucgr.A02354 Eucalyptus grandis HOM05D001129 ORTHO05D003157 1.4e-08 64.7 46 63.0
Eucgr.A02357 Eucalyptus grandis HOM05D001129 ORTHO05D003157 1.4e-08 64.7 46 67.4
Os01g0778800 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003157 1.4e-08 64.7 46 67.4
BcaB02g08315 Brassica carinata HOM05D001129 ORTHO05D003157 1.8e-08 64.3 46 69.6
BcaC02g09940 Brassica carinata HOM05D001129 ORTHO05D003157 2.3e-08 63.9 46 69.6
C04p34960 Brassica napus HOM05D001129 ORTHO05D003157 2.3e-08 63.9 46 69.6
BolC4t25051H Brassica oleracea HOM05D001129 ORTHO05D003157 2.3e-08 63.9 46 69.6
Os07g0570100 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003157 2.3e-08 63.9 55 60.0
AUR62026034 Chenopodium quinoa HOM05D001129 ORTHO05D003157 4.0e-08 63.2 72 50.0
Eucgr.A02355 Eucalyptus grandis HOM05D001129 ORTHO05D003157 4.0e-08 63.2 46 69.6
Eucgr.A02358 Eucalyptus grandis HOM05D001129 ORTHO05D003157 4.0e-08 63.2 46 69.6
Mapoly0021s0007 Marchantia polymorpha HOM05D001129 ORTHO05D003157 4.0e-08 63.2 46 65.2
PGR004G2267 Punica granatum HOM05D001129 ORTHO05D003157 4.0e-08 63.2 46 69.6
CBR_g12082 Chara braunii HOM05D001129 ORTHO05D003157 5.2e-08 62.8 46 63.0
Peaxi162Scf00493g00005 Petunia axillaris HOM05D001129 ORTHO05D003157 5.2e-08 62.8 36 83.3
Os07g0570500 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003157 1.2e-07 61.6 55 54.5
Solyc04g015690.4 Solanum lycopersicum HOM05D001129 ORTHO05D003157 1.2e-07 61.6 46 65.2
CAN.G676.67 Capsicum annuum HOM05D001129 ORTHO05D003157 1.5e-07 61.2 46 65.2
Sopen04g007770 Solanum pennellii HOM05D001129 ORTHO05D003157 1.5e-07 61.2 46 65.2
Atru.chr12.1652 Acer truncatum HOM05D000096 ORTHO05D000045 2.0e-07 60.8 60 58.3
ATR0332G050 Amborella trichopoda HOM05D001129 ORTHO05D003157 2.0e-07 60.8 46 63.0
Thecc.05G154700 Theobroma cacao HOM05D001129 ORTHO05D003157 5.7e-07 59.3 46 60.9
Pp3c5_8950 Physcomitrium patens HOM05D001129 ORTHO05D003157 7.5e-07 58.9 46 60.9
AagrBONN_evm.TU.Sc2ySwM_228.1876 Anthoceros agrestis HOM05D001129 ORTHO05D003157 2.9e-06 57.0 46 60.9
Pp3c14_4240 Physcomitrium patens HOM05D001129 ORTHO05D003157 2.9e-06 57.0 46 60.9
Pp3c14_4243 Physcomitrium patens HOM05D001129 ORTHO05D003157 2.9e-06 57.0 46 60.9
Duzib093G0063 Durio zibethinus HOM05D001129 ORTHO05D003157 3.7e-06 56.6 46 58.7
Pp3c10_5860 Physcomitrium patens HOM05D001129 ORTHO05D003157 6.4e-06 55.8 46 60.9


User provided reference genes

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